syk (syk)


Basic Information

Item Value
gene id syk
gene name syk
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 432587 ~ 548171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665569.1
GAGCTTCACGCAGTGTGTGAAGAGGAGCCTGTGATGTTCACAGAGCTGCGCGTGGATGTGTCTGGATGTAGGCCAAGAGCTCACGTGCGACCGAGATCACGCAGATTTCTGGGGACAGAAGGAGCTAGGCGAGCAGTCATGGCGGATAAAGTGCCGTCTTTGTCGTTCTTCTACGGGAACATCGCTCGAGAGGAGGCGGAAGAGTACCTGAGGCATGCAGGTATGAGCGACGGCCTCTACCTGCTGCGGCAGAGCAGGAACTACCTGGGGGGCTTCGCTCTGTCTGTGGCCTACAACCGCCAGTGCTACCACTACACCATAGAGAAAGAGCTGAACGAGACCTTTGCCATCGTGGGCGGAAAATCCCACCGGACCCCGCAGGACGTGATCGAGTACCACTCGCAGGAGTCTGACGGACTCATCTGCCTGCTGAAGAAACCCTGCAACCGGCCGCGCGGCGTGCAGCCCAAAGTGGGGGCTTTTGAGGATGTGAAGGAGAAGCTGATCAGGCAGTACGTCACACAGACCTGGAACCTGCAGGGGGCTGCACTGGAGCAGGCCATCATCAGTCAGAGACCCCAGTTGGAGAAGCTGATTGCCACCACAGCACATGAGAAAATGCCCTGGTTCCACGGCAACATCACACGAGAAGACTCAGAGCTGCGCTTACACGGCAGCTCACGCGTCAACGGCAAGTTCCTAATCCGGCAGCGAGACACCAACGGCTCCTTCGCGCTCTGCCTCTTACACAACCACCAGGTCATGCACTATCGCATAGACAGAGACAAAGCCGGAAAACTCTCCATTCCTGACGGGAAGAAGTTTGATACACTGTGGCAGCTGGTGGAACATTATACCTACAAACCTGACGGCCTGCTGAGAGTCCTGACAGAAGCCTGCCCACACCCCGCCTTCAGCCACCAGTCTGCTGACGGCCGACCTGGAGTTCCTCCGAATCATCCACAGACAGGGCATTTTCCAGGACTTCTCAACAGACTCAAATCCTACTCCTTCCCCaaacctggccaaaaaaagGAGGGAGCTTTTAGCGGCATTCAACTCATCAGACGTCTGTTACCGTCCTCCATCTCTACCAGAAATACATTGCCTTCCCCGACAAGCAACTCCGCCAGCAACAACAATCCTTATGAAAGGCCAAAAACTACAGAAATGCCTATGGACTCGGAGGTATACGAGAGTCCGTACGCCGACCCTGACGAACTGCGCACCACCACTGTGGATCGTAACCAGCTGTTCCTGGAGGACGGGGAACTGGGCTCAGGAAACTTCGGAACTGTTCTCAAAGGAATCTACAAGATGAGGAAaaAAGAGAAACCAGTTGCAGTGAAGATCTTGAAGAATGATGAGAACAATGAGGCAGTGAAGCAGGAAATGCTGCGGGAGGCTGAGGTCATGCAGAAGCTGGACAACCCCTACATTGTTCGTATGATCGGCATCTGTGAGGCGGAGAACCTTATGTTGGTGATGGAGCTGGCCGAGTTGGGCCCACTACACAAATACCTGCAGAGAAACAAGCACGTCACCTCAAAGAACATCACAGAGCTTGTTCATCAGGTGTGCATGGGGATGAAGTACCTGGAGGAAAGCAACTTTGTACACAGAGATCTGGCAGCCAGAAACGTTCTTCTGGTCACCCAGCACTACGCCAAGATCAGCGACTTCGGCCTGTCCAGAGCCCTTGGAGAAGAACGCATTTATAACTGCTTATGTCCTGGTAAGTGGCCTGTAAAGTGGTACGCTCCAGAGTGCATGAACTTCTTCAAGTTCTCCTGTAAGAGTGACGTGTGGAGCTTCGGGGTTCTGATGTGGGAGGCTTACTCATACGGACAGAAGCCATACAAGGGGATGAAGGGCAATGAGGTGATCCAGATGGTTGAAAGAGGGGAGAGAATGGCTGCTCCAGCCGACTGTCCACCTGAGATGTATGAACTCATGAAGAAATGCTGGACGTACAAgGTGGATGATAGGCCTGGCTTTGCTGTGGTTGAGCCCAGACTGAGGGAGTACTATTATGATATTTCTCAATGATCAGAGCTCATGCTGGAAGACGACCCTCAGCTGTTTGTACATGGAGTTTAAATCGTTTCAGATTTTAGGCCCACTTTTTCAAACCTCAATTTTTAACATAATTATGCTTGAAAAGTCTGAtggaggaaaaaataagaatggAACTAGAAGGACTgaacattttttcattatttaactgAGAGCTTCTGcggagatgttttttttttttttgtaatgcacCTCAAGCCAAAGTTATGATCAGCAACTGCTTATCTCGCCAGTTTTCCTATAGCAATACGCTGTttataataatatcagtttctGTTGTAtcattttttctacatttatacTTCTCTTCAGCTTAGCAATATGATGCAGTGTAATGGAGTAGCGGATTTTGAAATGTAGCTGTTATAGTTTTGGCTGAAATCACAGCTGTGCGGTGCTAAAGGAGAATAATGAAAACTGGAGGCTGTGACAGGTTTGTGGAGAATGAATTTCAGCTGCAAAAGCAACAGCAGCGTGAAGTGTGACTGGACACCAGCAGACAGTGTGGACATTTTGAAGACGTTCTCACAGTGTTTTGAACAAGTAGTTAGTGATGGGTTTTTTTGAAGATGCCTGAATTATTCATAATGTAACACATTCAACAAAAGCCTGGTGTAAAAAGCTAAAGACTGCTGCAATTAATGGCAGTCCAAACTTACTGACTGTGTTTCTGAGGTGTACAGTGTAGCATAATGCTGTGTTTTCCTTCAACAGTATTCCAGTTAAACATTAACTGTTAAAGGAGATGGAAAGTACTGTGTGTCCATCTGATTTAATGCGGTACAAATGAATGGAAATGATAAAATAGAACTGTATAATATTACTGATTTGACTACTGTTGATGTTCAGTGCATCCATCATGGATTCTGAACTCGGGGTTATTGAGGCTTTCCCGAAATTCTGAtaagaaatcagactttttgGGGCGTTCCAGTTAAAGCATCCATATGTAACTTGGTAATTCCAACTGCAAAGTTGAAATAGAATGCAGCATAAACCCATACtcaacagtaacagtaatagtAATGATAGagtcaaataaaatcaaagcaaATCTGAAAGCGCCTGTTATTGAGCTGATTAGTTGGGTCAGGTGTGTTGGCAGGAGCAGGAAAAGCAACTACTACTTAACAAACTATCAAAATAGTTAGGTTTTGGGTTTAGGTACTGTTGGGTACGGGTAGGCTGGTCATCTGCATATCTGCTTCTACTATATTGCCAGAAGTATCCACTCGCCTGCATTACATTTGGAAAGTGTAAGGCTTGGGTGGAGCTCTCTACGCTGTACTGTTCCTGATCTAATCTGTAGCTACATGacgtttggaggtctgtagtggtTGACTTGGAGACCTCTGTGCTCTTTGCTTCTCAGTATCCTTTGCTTTTGTTCCCAGTTGCTTCCACTtatttgttataatatcacttacagttgactgtggaatattaaATAGTGAGGAAagttcacgactggacttgttgtacAGATGCTGCATCCGATCCCGGTACCACACTGGAGTTTACTAAGCTCCTAAGAGCTGAGACcaattatttcagtaatgtttgtagaagcagccTGCAGCATGACTAGTCTgtgcttggttttatataataccTGAGGGCATGGAAATGATTGAAATGATCTCAATGAGTGAGTTAAAACTTTTGGCACTAtagtgtatgtatttgtgtgcaAATGACCATCAAAAATAAAGTGCTTCCAAAATCATTTCCTCTGTTGGAAATGTAATTGATGTATACTTTGCAGTACTGCCTAAGTATTGCCCATCTTAAATACTGTGTTGACTCGTTTCTTATATCCGTTCCCAATACAAGTTCTACATTATGCAAGTTTCAGTTGTTCATTTCTTTCTGATCTGTTTCCtaaacaaattttaaaaagtatgtaagaGATTTGTATCCTCTGGTGATCGTGtgataagtgtttttcttttatacaaTGAGAAATTTAGGTTAGGACCTCCCTCTCCCCCAATAATTAAGTGCAATGGAAAtgtggaaaatgaaatgaaaatactGTGGAATCCTTCCCTGATCTAACCAGCGCTGTCGCTCTTCTTTTTGCACACCTCCTCTGGTCTTCCATGCTTCCATGCAACAGAATTTGAATGCAAACTTGTGATGTGTTGAGTTGATCTTTGTACAAACAGCTCTTTCAAGCCGTTTGTCcaataattcataaataaagaactattttaaatca

Function

symbol description
syk Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Acts upstream of or within lymphangiogenesis and positive regulation of cell migration involved in sprouting angiogenesis. Predicted to be located in cytoplasm. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human SYK (spleen associated tyrosine kinase).

NR:

description
tyrosine-protein kinase SYK

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0090050 positive regulation of cell migration involved in sprouting angiogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K05855 SYK; spleen tyrosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665569.1 True 4297 mRNA 0.45 16 432587 548171

Neighbor

gene id symbol gene type direction distance location
LOC103031748 NA coding upstream 27836 402467 ~ 404751 (+)
LOC103025635 LOC103025635 coding upstream 33741 395959 ~ 398846 (+)
LOC103024567 LOC108427294,LOC108413448 coding upstream 43317 385503 ~ 389270 (+)
LOC103024265 NA coding upstream 48708 382055 ~ 383879 (+)
cunh5orf30 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 coding upstream 59888 366947 ~ 372699 (+)
trnar-ccu_63 NA coding downstream 345294 893465 ~ 893537 (+)
trnam-cau_91 NA coding downstream 345589 893760 ~ 893831 (+)
trnam-cau_92 NA coding downstream 345791 893962 ~ 894033 (+)
trnam-cau_93 NA coding downstream 346006 894177 ~ 894248 (+)
G303305 NA non-coding upstream 69162 361945 ~ 363425 (+)
G303228 chd1 non-coding upstream 339967 90240 ~ 92620 (+)
G303226 chd1 non-coding upstream 344709 85897 ~ 87878 (+)
G303221 NA non-coding upstream 371274 59902 ~ 61313 (+)
G303218 NA non-coding upstream 381547 30569 ~ 51040 (+)
LOC111191252 NA non-coding downstream 3199 551370 ~ 567446 (+)
G303418 NA non-coding downstream 244181 792352 ~ 795312 (+)
G303413 NA non-coding downstream 257542 805713 ~ 809762 (+)
G303421 NA non-coding downstream 264708 812879 ~ 813722 (+)
G303307 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 other upstream 48714 365993 ~ 383873 (+)
LOC111191247 NA other downstream 257919 806090 ~ 806546 (+)

Expression


Co-expression Network