LOC111191252


Basic Information

Item Value
gene id LOC111191252
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 551370 ~ 567446 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649407.1
gaatagcactacagTAGCAATCTTGCTAAATGTGTAAATCATTTACTGTAATATGTTAGGATTGCTGTGGTAACTTCTCTGTATTGGATCCCCTTTCTGGACTATTTTTATtcataagacgcactggattataagacgcattaaGTGACAGTAGTAAGAATGCATACGTGAAGAAAACAAGGGTCTCGCcttgtttctcttctaattcagcaggttctGCTGCTGGGAAAGCACCTAAGTGTACAAAATTGCACTTCTTaacaaaaaacttttctttctaattgaatcgagcactggatgttaatctacacagatttctctcctgaaatctgtttatttgggacacttccCACATGACACaccccacaggacgctgcccacaggatgctgctgaCTGAAGATTTCTTGCTGCAGTGACAACTCACAATGGGACAGGAACACTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649407.1 True 445 lncRNA 0.41 3 551370 567446

Neighbor

gene id symbol gene type direction distance location
syk syk coding upstream 3199 432587 ~ 548171 (+)
LOC103031748 NA coding upstream 146619 402467 ~ 404751 (+)
LOC103025635 LOC103025635 coding upstream 152524 395959 ~ 398846 (+)
LOC103024567 LOC108427294,LOC108413448 coding upstream 162100 385503 ~ 389270 (+)
LOC103024265 NA coding upstream 167491 382055 ~ 383879 (+)
trnar-ccu_63 NA coding downstream 326019 893465 ~ 893537 (+)
trnam-cau_91 NA coding downstream 326314 893760 ~ 893831 (+)
trnam-cau_92 NA coding downstream 326516 893962 ~ 894033 (+)
trnam-cau_93 NA coding downstream 326731 894177 ~ 894248 (+)
G303340 NA non-coding upstream 104811 440422 ~ 446559 (+)
G303341 NA non-coding upstream 105501 443859 ~ 445869 (+)
G303305 NA non-coding upstream 187945 361945 ~ 363425 (+)
G303228 chd1 non-coding upstream 458750 90240 ~ 92620 (+)
G303226 chd1 non-coding upstream 463492 85897 ~ 87878 (+)
G303418 NA non-coding downstream 224906 792352 ~ 795312 (+)
G303413 NA non-coding downstream 238267 805713 ~ 809762 (+)
G303421 NA non-coding downstream 245433 812879 ~ 813722 (+)
G303307 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 other upstream 167497 365993 ~ 383873 (+)
LOC111191247 NA other downstream 238644 806090 ~ 806546 (+)

Expression


Co-expression Network