G306943


Basic Information

Item Value
gene id G306943
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 204053 ~ 204448 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU422689
CCACAGAGGGCCCAGGTCACTGAGGGAGCAGAGCTCATCCATCCAGACTCCTTCTGTTCTCCTCCGGCGTCTTCTTTTTTCTCcactttacacagatttctgctACAACTCACACGCTTTTCCTCCTCCACAGCTCCCCGAATCCTCTAAACCTCAGCTTGTTTATTTAGTCTCAGTCTGAATCAGTTGGCTGACTTgtgagactctctctctctctctctctctctctctctctctctcactctctttctctttctctctgtgtttatgcTCAGGTTGGTGCTGCTCCTCTGTTTAAGACTCACTCTCTCCTCCTTCTGAAGGTGGGCGCAGGGTTCGGCTCTTAgacccacctctctctctctctctctctc

Function

GO: NA

KEGG:

id description
ko00380 Tryptophan metabolism
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU422689 True 374 lncRNA 0.51 2 204053 204448

Neighbor

gene id symbol gene type direction distance location
LOC103044465 NA coding downstream 40115 152798 ~ 163938 (-)
tbc1d10b tbc1d10b coding downstream 70460 104745 ~ 133593 (-)
LOC103044774 LOC103044774,LOC108438020 coding downstream 103024 92506 ~ 101029 (-)
LOC103045793 mylpf,LOC103045793 coding downstream 127301 69819 ~ 76752 (-)
cd2bp2 cd2bp2 coding downstream 138490 57616 ~ 65563 (-)
abcc1 abcc1,LOC107654509 coding upstream 72181 276629 ~ 319839 (-)
nde1 nde1,LOC107654507,LOC107688124,LOC107601288 coding upstream 187750 392198 ~ 417382 (-)
pirt pirt,LOC103042629 coding upstream 219878 424326 ~ 427020 (-)
LOC103041204 gspt1l,LOC108438004,LOC107721494,LOC100304847,LOC107654506,LOC107590378 coding upstream 227709 432157 ~ 448660 (-)
pdxdc1 pdxdc1,LOC107601286 coding upstream 248146 452594 ~ 484902 (-)
G306934 NA non-coding downstream 86233 117064 ~ 117820 (-)
G306834 NA non-coding downstream 121936 32740 ~ 82117 (-)
G306951 NA non-coding upstream 23085 227533 ~ 232773 (-)
G306968 NA non-coding upstream 82450 286898 ~ 287535 (-)
G306995 NA non-coding upstream 218495 422943 ~ 424133 (-)
G307001 NA non-coding upstream 290090 494538 ~ 508941 (-)
G307005 LOC103040592,LOC108438007,LOC107721468,LOC108274424 non-coding upstream 297435 501883 ~ 527475 (-)
LOC111191304 NA other downstream 52802 83699 ~ 151251 (-)
smim22 smim22,si:ch1073-443f11.2,LOC107688153 other upstream 566672 771120 ~ 776215 (-)

Expression


Co-expression Network