G306968


Basic Information

Item Value
gene id G306968
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 286898 ~ 287535 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU422718
gtcaaaaaaatattttttacagtaatctAATGTTCTAATGTTCTCCAAATTCTATGTTCCTGTAGTCCAgaactgaattaattaattacacttGTGTTACTCTGAATTTATACTTCCACAATTTCTGAGGAACAGATTATTCTACACAtattctttacacacacacacacacagtgcacacatgcagcttgtctttttttttttttaagtaccactaaagaaaaagaagcacaTGTCTGGGCCATCGTAGTGTAAAAGGTAGTTACTTTAATTTTCTGTTTAAAGAAGTTGGTTTCCTTTGTtccctggttgttttttttttacgatttaATGACGGCCACAATCAAGAATGCTAAATTTCTGCATGCTTTGTTCGTTTGTCAAACCATTACATAAAGAAAAACTACATATTATACTGGATGCTTAAAAgaatctgtaaaataaaaaatcttataaTTAACTGCCCTAAGGCCCGAATCTTTACATACTCAGGTAATGCCCtgttatttattcactaaaGCACTGAAAAGGTTCTGTTTTAcaggtataacactgctttgtCCTGATGTGAAATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422718 True 577 lncRNA 0.32 2 286898 287535

Neighbor

gene id symbol gene type direction distance location
LOC103044465 NA coding downstream 122960 152798 ~ 163938 (-)
tbc1d10b tbc1d10b coding downstream 153305 104745 ~ 133593 (-)
LOC103044774 LOC103044774,LOC108438020 coding downstream 185869 92506 ~ 101029 (-)
LOC103045793 mylpf,LOC103045793 coding downstream 210146 69819 ~ 76752 (-)
cd2bp2 cd2bp2 coding downstream 221335 57616 ~ 65563 (-)
nde1 nde1,LOC107654507,LOC107688124,LOC107601288 coding upstream 104663 392198 ~ 417382 (-)
pirt pirt,LOC103042629 coding upstream 136791 424326 ~ 427020 (-)
LOC103041204 gspt1l,LOC108438004,LOC107721494,LOC100304847,LOC107654506,LOC107590378 coding upstream 144622 432157 ~ 448660 (-)
pdxdc1 pdxdc1,LOC107601286 coding upstream 165059 452594 ~ 484902 (-)
LOC103025515 si:dkeyp-72e1.9,LOC108438022,LOC107721498,LOC107601283,LOC107688120 coding upstream 268851 556386 ~ 670705 (-)
G306951 NA non-coding downstream 54125 227533 ~ 232773 (-)
G306943 NA non-coding downstream 82450 204053 ~ 204448 (-)
G306934 NA non-coding downstream 169078 117064 ~ 117820 (-)
G306834 NA non-coding downstream 204781 32740 ~ 82117 (-)
G306995 NA non-coding upstream 135408 422943 ~ 424133 (-)
G307001 NA non-coding upstream 207003 494538 ~ 508941 (-)
G307005 LOC103040592,LOC108438007,LOC107721468,LOC108274424 non-coding upstream 214348 501883 ~ 527475 (-)
G307006 NA non-coding upstream 218838 506373 ~ 508069 (-)
G307041 NA non-coding upstream 267842 555377 ~ 556258 (-)
LOC111191304 NA other downstream 135647 83699 ~ 151251 (-)
smim22 smim22,si:ch1073-443f11.2,LOC107688153 other upstream 483585 771120 ~ 776215 (-)

Expression


Co-expression Network