G307100 (glyr1,LOC107590383,LOC107688117,LOC107721499)


Basic Information

Item Value
gene id G307100
gene name glyr1,LOC107590383,LOC107688117,LOC107721499
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 714416 ~ 754380 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU422884
taaaattacattaaaccaGACCAAATAATATAAACTGGACATTGGGTTTGTTTATTGGGAGAAGGATTCAGATGACTGCACAAAAAAGCTTGACATTTTCACATTTACaagaaattataaatatttccaaTTCTACATCACCCTCATTCCACAAACTGGAATCCGCTTGTCATTTTTACATTGTCATTAGGACTATATAAGCcacataaatcaataaaccatttacagtaaataaatccATTAGCTAACACAAAACAacctattaatattaattaagacACCAGATGATTAATAATTTCAGTAGAGTCAAACTGAAAGCATGTTAAGTCTTGTATTCCTTGAGTAACCCAATCACACTGATAGGGCTATATACAGCTTACTATAGTATCAATTTAGAACAAAAACTCAAAATCACTCATTTAATGTCGTTGTGACATTCGATTTTCAGAAACAAGTAACCCTGTACTGGAGTTGGGTTCTGAAACAGAAATGCTGCACATCCACAGCTGACTTCATGGTGTCTGGATATGCGTACAATTTGTACTTTaaaatcaacaacaaaaaattgaAATTGATAAGTTATGAGTAAAACATTGCTAAATCTGCCTTGAAGTGAGAAACGTATTTGAAAGTTatacagctttttaaaactgaaaatgagccaattttttttaccagtgtCTGACAAAATTATTATAAGGCAAAATGATGATCTGATGGCCTCTAAAAACATCAAACGGTGTTAAATTTGTGGAGGTCCATTACAATAACAACAGAAAatgcataaaacaaaaactaaattacactTTCCATTTTCTTCACATCTATCCACAGTTTAGCCGACGTATCTCTGACCCTAAAGGTGACCCATACTCACGGACACAACCCCAAAATGACCAGTAATATCTCAAAATCCTCACAAAGTGTGGAATAACATGTCAGTAGATTGAGAACCCATTTTTGGAATCAGACATATGATTAATATATGTCCAAtctataaaaaacaataataaaatcacaTTACTGCATTCTTTGTAAGGCATCAGAATATCAAGCTGTGTCtcaaaaaaacgacaaataatGTGATCGGCCTTGTAGTCTGGAGATCTTtagagataaaataaataaatacatctatGTGGGTTATGATATTAAGGCAATGCAGTGGCTTCTTCATGCTCCTTTAGCCTTTTCTTGGTAGGCAGTTTTACAGAATTCTGGACGAACACAATTAGAGAATTAAATAAGCAACTGTGTGAAGATATGAGCgataaataaaaccaaaaccCCTTCAAACGACACTGCATTATATGCAGTAGACTCGAACACCGGCCCTAATCGTAAAATCACCTCACGCAGAGGAAACGCAcaaggaaagaaaaataagaaaaaagaataaatcatAGTCAGTGCAATGCTCAGAGGTGGCTGCTAAAGAGTTCCCATCATACATGGGAAAAGGTATCAATGGTGCTAAACAAAACTTGTCagcaaagagaaacagaaactgaAAGAGAAGAAAGTTTGTGGTCCAGAATTTTGAGCACATCTTCAGGGATTAGTGAATGTAAGCTCTGTAGACTGCAGACATGTCGTTGTCTGACTGGTCCAAAGCTTTTGCCCTCTTGTAGACCTGAAAACAACAGGAGAACAGATGAGAATCAGAGCTCTTTATTAGTATTTCCTGCTCTTTTGCTCTGTTAATCTAACCACTACTGTCCAGAAAACTTGATTTTGGAACACTGCTGTGAGAATCAAAGAACTGGGGCACATCTAGAACACGTCTGCTATCCAAGTCTATGTTTCTGCTCCTGTAATGGACGagacaatttgtgtgtgtgtgtg
>TU422885
taaaattacattaaaccaGACCAAATAATATAAACTGGACATTGGGTTTGTTTATTGGGAGAAGGATTCAGATGACTGCACAAAAAAGCTTGACATTTTCACATTTACaagaaattataaatatttccaaTTCTACATCACCCTCATTCCACAAACTGGAATCCGCTTGTCATTTTTACATTGTCATTAGGACTATATAAGCcacataaatcaataaaccatttacagtaaataaatccATTAGCTAACACAAAACAacctattaatattaattaagacACCAGATGATTAATAATTTCAGTAGAGTCAAACTGAAAGCATGTTAAGTCTTGTATTCCTTGAGTAACCCAATCACACTGATAGGGCTATATACAGCTTACTATAGTATCAATTTAGAACAAAAACTCAAAATCACTCATTTAATGTCGTTGTGACATTCGATTTTCAGAAACAAGTAACCCTGTACTGGAGTTGGGTTCTGAAACAGAAATGCTGCACATCCACAGCTGACTTCATGGTGTCTGGATATGCGTACAATTTGTACTTTaaaatcaacaacaaaaaattgaAATTGATAAGTTATGAGTAAAACATTGCTAAATCTGCCTTGAAGTGAGAAACGTATTTGAAAGTTatacagctttttaaaactgaaaatgagccaattttttttaccagtgtCTGACAAAATTATTATAAGGCAAAATGATGATCTGATGGCCTCTAAAAACATCAAACGGTGTTAAATTTGTGGAGGTCCATTACAATAACAACAGAAAatgcataaaacaaaaactaaattacactTTCCATTTTCTTCACATCTATCCACAGTTTAGCCGACGTATCTCTGACCCTAAAGGTGACCCATACTCACGGACACAACCCCAAAATGACCAGTAATATCTCAAAATCCTCACAAAGTGTGGAATAACATGTCAGTAGATTGAGAACCCATTTTTGGAATCAGACATATGATTAATATATGTCCAAtctataaaaaacaataataaaatcacaTTACTGCATTCTTTGTAAGGCATCAGAATATCAAGCTGTGTCtcaaaaaaacgacaaataatGTGATCGGCCTTGTAGTCTGGAGATCTTtagagataaaataaataaatacatctatGTGGGTTATGATATTAAGGCAATGCAGTGGCTTCTTCATGCTCCTTTAGCCTTTTCTTGGTAGGCAGTTTTACAGAATTCTGGACGAACACAATTAGAGAATTAAATAAGCAACTGTGTGAAGATATGAGCgataaataaaaccaaaaccCCTTCAAACGACACTGCATTATATGCAGTAGACTCGAACACCGGCCCTAATCGTAAAATCACCTCACGCAGAGGAAACGCAcaaggaaagaaaaataagaaaaaagaataaatcatAGTCAGTGCAATGCTCAGAGGTGGCTGCTAAAGAGTTCCCATCATACATGGGAAAAGGTATCAATGGTGCTAAACAAAACTTGTCagcaaagagaaacagaaactgaAAGAGAAGAAAGTTTGTGGTCCAGAATTTTGAGCACATCTTCAGGGATTAGTGAATGTAAGCTCTGTAGACTGCAGACATGTCGTTGTCTGACTGGTCCAAAGCTTTTGCCCTCTTGTAGACCTCGTTTGCAGCTGCTGCCATTGGTGTTGGGTGATTAGCTGAATCTCCCATTGAAATGGCTAATCTTAAATCTTTCTGGATGTGTTTTAGGTAGTAATCTGGTTTGAAGTTACCCTGCAGGATATTTTGGCATTTCTGGTCCACAAATGTGCTTGCCATCTGCCCCTGACAAAGAATATCCAGGAAGGTCTGTTGTGATTGGCCCGTGGCCTGAGCCAGAGTAAGTCCCTCAGCAATAGTGGCCATGAAGCTGCCCTGGACCATGTTGAGGATCAACATCATCCTTGCAGCATTACCGGCTTCTCCTAAAAAGAAGGATGTTTTGCCCATAGCCTGGAAGCAGCTGCTACAATCTTCATAAACACTTCGATCTCCAGCTGCAACTATAACCAACATGCCGTCATTGGACAACTGCTGGCTGCCAGACACTGGAGCTTCCAGGAAGCGACCACCTCTTGACGTAATGACCTGTGAAAGCTCTGTAATGGTTTCTGGATCGACTGTAGACATTTCCACATAACACTTTCCCGGTCTGATACCCTGTAATACACCACTGGGACCCAAAACcaaTCTCGGGCAGCTTTTGGGTCTGATACACAGGAGAATGTGATATCACACATGGATACAACTTCTGCTGGTGTCCGCCCTAATCTGGCTCCTTCCTGAATGAACAAGTCGCACTTTTCTGCTGTGCGATTCCACACCGTGACAACGTGTCCCATCTTCAGAAGGTTAGAGACTATCCCACTACCCATTAGCCCAAGCCCGAGGAACCCTATTCTTTTGTCTGTGGGTGTGATGCTGCCGTTGACGGCTGTGCTGTCTGCTGCCTGAATAGACGTGGAGCCGTGATCCTCTTCAACAATCTTCAACCGTTTGCTGATTGGCTCCATCGAAGAGGCCggCTTGTCTGAAGATCCACCCTTAAATGCATCTTCATCATCTTCCTCTATAATCTTCATAGGTTTGGCTGCAGTTTTTCGCCCCTTGTCCGTTTTATTTTTGTCGTCTGAGGCATGTGCCTGCTCTTTCCCCTTAGCTTTCTTCAGGTACTCTTCAACAGCATCAACAGCCTGCTGAAACCGCTTGCCTTTGTTTATCTTGATCATCTCCTCCTTGTGGGGGTGGTACGGCTTCAGCTGTTCAACCTTTATCCAGGCATGATCCTCAGTCCCGAAAAACTTCACAAAGAAGCATTTTTTGCCTCTGGGCTTCTTTAGGTCCTTTGGGGGGCTGACAACCTTCCCAGGCCAAGGAGGGTACCGGCCAAGCTTTCCCCAAACCAAATCCCCGATCCGCAGATGCACCGTCGCCATCTTAACCCTTTACTAAAGACGCACTGAGCGCAGGAGAGACGCACACCCACACACGTCACTACCGTAGATATCCCACTGGGCG
>TU422886
taaaattacattaaaccaGACCAAATAATATAAACTGGACATTGGGTTTGTTTATTGGGAGAAGGATTCAGATGACTGCACAAAAAAGCTTGACATTTTCACATTTACaagaaattataaatatttccaaTTCTACATCACCCTCATTCCACAAACTGGAATCCGCTTGTCATTTTTACATTGTCATTAGGACTATATAAGCcacataaatcaataaaccatttacagtaaataaatccATTAGCTAACACAAAACAacctattaatattaattaagacACCAGATGATTAATAATTTCAGTAGAGTCAAACTGAAAGCATGTTAAGTCTTGTATTCCTTGAGTAACCCAATCACACTGATAGGGCTATATACAGCTTACTATAGTATCAATTTAGAACAAAAACTCAAAATCACTCATTTAATGTCGTTGTGACATTCGATTTTCAGAAACAAGTAACCCTGTACTGGAGTTGGGTTCTGAAACAGAAATGCTGCACATCCACAGCTGACTTCATGGTGTCTGGATATGCGTACAATTTGTACTTTaaaatcaacaacaaaaaattgaAATTGATAAGTTATGAGTAAAACATTGCTAAATCTGCCTTGAAGTGAGAAACGTATTTGAAAGTTatacagctttttaaaactgaaaatgagccaattttttttaccagtgtCTGACAAAATTATTATAAGGCAAAATGATGATCTGATGGCCTCTAAAAACATCAAACGGTGTTAAATTTGTGGAGGTCCATTACAATAACAACAGAAAatgcataaaacaaaaactaaattacactTTCCATTTTCTTCACATCTATCCACAGTTTAGCCGACGTATCTCTGACCCTAAAGGTGACCCATACTCACGGACACAACCCCAAAATGACCAGTAATATCTCAAAATCCTCACAAAGTGTGGAATAACATGTCAGTAGATTGAGAACCCATTTTTGGAATCAGACATATGATTAATATATGTCCAAtctataaaaaacaataataaaatcacaTTACTGCATTCTTTGTAAGGCATCAGAATATCAAGCTGTGTCtcaaaaaaacgacaaataatGTGATCGGCCTTGTAGTCTGGAGATCTTtagagataaaataaataaatacatctatGTGGGTTATGATATTAAGGCAATGCAGTGGCTTCTTCATGCTCCTTTAGCCTTTTCTTGGTAGGCAGTTTTACAGAATTCTGGACGAACACAATTAGAGAATTAAATAAGCAACTGTGTGAAGATATGAGCgataaataaaaccaaaaccCCTTCAAACGACACTGCATTATATGCAGTAGACTCGAACACCGGCCCTAATCGTAAAATCACCTCACGCAGAGGAAACGCAcaaggaaagaaaaataagaaaaaagaataaatcatAGTCAGTGCAATGCTCAGAGGTGGCTGCTAAAGAGTTCCCATCATACATGGGAAAAGGTATCAATGGTGCTAAACAAAACTTGTCagcaaagagaaacagaaactgaAAGAGAAGAAAGTTTGTGGTCCAGAATTTTGAGCACATCTTCAGGGATTAGTGAATGTAAGCTCTGTAGACTGCAGACATGTCGTTGTCTGACTGGTCCAAAGCTTTTGCCCTCTTGTAGACCTCGTTTGCAGCTGCTGCCATTGGTGTTGGGTGATTAGCTGAATCTCCCATTGAAATGGCTAATCTTAAATCTTTCTGGATGTGTTTTAGGTAGTAATCTGGTTTGAAGTTACCCTGCAGGATATTTTGGCATTTCTGGTCCACAAATGTGCTTGCCATCTGCCCCTGACAAAGAATATCCAGGAAGGTCTGTTGTGATTGGCCCGTGGCCTGAGCCAGAGTAAGTCCCTCAGCAATAGTGGCCATGAAGCTGCCCTGGACCATGTTGAGGATCAACATCATCCTTGCAGCATTACCGGCTTCTCCTAAAAAGAAGGATGTTTTGCCCATAGCCTGGAAGCAGCTGCTACAATCTTCATAAACACTTCGATCTCCAGCTGCAACTATAACCAACATGCCGTCATTGGACAACTGCTGGCTGCCAGACACTGGAGCTTCCAGGAAGCGACCACCTCTTGACGTAATGACCTGTGAAAGCTCTGTAATGGTTTCTGGATCGACTGTAGACATTTCCACATAACACTTTCCCGGTCTGATACCCTGTAATACACCACTGGGACCCAAAACcaaTCTCGGGCAGCTTTTGGGTCTGATACACAGGAGAATGTGATATCACACATGGATACAACTTCTGCTGGTGTCCGCCCTAATCTGGCTCCTTCCTGAATGAACAAGTCGCACTTTTCTGCTGTGCGATTCCACACCGTGACAACGTGTCCCATCTTCAGAAGGTTAGAGACTATCCCACTACCCATTAGCCCAAGCCCGAGGAACCCTATTCTTTTGTCTGTGGGTGTGATGCTGCCGTTGACGGCTGTGCTGTCTGCTGCCTGAATAGACGTGGAGCCGTGATCCTCTTCAACAATCTTCAACCGTTTGCTGATTGGCTCCATCGAAGAGGCCggctataaaaaaataaaaaataaagcataacCAATCAAGCAACCTAAACTCTATGAGGATCTGGCAGCATGCAATCAATCAATCCCTAGATGTCCATTTGCTAGATTGTTTGGTACACCGAGGTGGGAGATAAAGGAAAAGTGCTGAGAATAACAGGGTTAAAACAGGTCAACTGATCTAACCAGGCTCAGCCCTCTAATGTGCTCACTTTTAGCTACTGTTGTTAATGCTGATAAAAATCCCACAAAACCTTAAAATTAGACGGTAGCGCAACCTCAGTTTATACACcacattattacaatatttacagtattttatttctatatcatttaactgaatattaataacactaGATGTCTATTTAGATGTAACTGTGTACAGTCTGCCATTAGGATGAATATTAAATATCACTCTAAATGTAGATACGGAAAAAATGCGTTGAGGTGCAGCTACAGTCTCTCAATAAGGTCAAATGGAATTTTTTTACCAGTGTTCTGTTAAACCTTTAACAGTAGGCTGTGCCTGATGAGGTCAATTATTGACTGCACTGTCTGTTGGTCAGTAGGTTGCCTCTGAAGCTTATCACGCAATCACATTCATAACTTCAGCAGTACAAACTATCCAATGAGTGAAAGAGCTAAAAAGGCAGCATATCAGTGACTGCAGTTATCTTTCACAGACATTAGGTCACTTCAGTTTAACTGAAATACTGTACAGTGAACAGATCAGTACACTGAATACAAAAAGCTTGAGGCAACCGAGTGGCCTTATCTTCTGTTCATTCACTCAAACTAAAGGGCCCATATctggtttgtgttttattttccttCAAGGTCgaattctaataataaaatgcattaaataaaattaaaatttattattaaaactccaaaattttaaattaaaaacacattttttacatactCCTATGACTTAGACTGTTTTTATAACTGGGTTTGACATGTGAAAGAACATTGTTTTAATAGGATTGTTCAAAAAGTAGTCCTGTTTGTAGGACAATTTAAACTCAATTGTGAAAGTGTGAGACTAAAGAACTGGAGGCTGAACAAACTAGTCTAATTTTTTGCCACACCCACTTTCAGGAGTTTGTTTCTTCTACTTTTGTTACTGTTGTATcgcattaaatttttttgtataaagaaGGTTACTATTGTGGAATGTGGTCATGAGCTAAGTAGAATTTAAACACCACAACAGATCAGAATGTTGTGGGGCATCAAACAACTTGCATCCATGTCTTtcaaagagaaggagatgccTCTATGGTTGAAGGTGCTAAATTTAAAACCCCACACAAACGGTCAATATATCAAAACTTATCAGATTGTATTGAGGAAACTCCGTAATGAACTCTGAGGTTCTTATATGATGTGTCCAATTTGTcaaacactctaaatatctgCTTCACCTAAGCTTAATAACCAAGCCATTTCTCAGGGTAAGAAAGTTCAAGCCTTGGTTTCCCCTCTACAATCTGGTAAGTGCAGACAAAGACACTTGGGAGGATGTAAAGTTTCAAATATACAGACACGCCTCTTCTCTGGAAAGCAGTGAATATAAACGTTATATGGTACAACTCAGATTATTGAGTTACACCatataaaaacagctttttgtatgtttataaTTGCTGTATTTGTAATCTGTAAATCAATCTAGCTATGCACCGTCGCACTGAAGGTCCTTGCACAAAG

Function

symbol description
glyr1 Predicted to enable methylated histone binding activity. Predicted to be located in nucleus. Orthologous to human GLYR1 (glyoxylate reductase 1 homolog).

NR:

description
PREDICTED: putative oxidoreductase GLYR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422884 False 1845 lncRNA 0.35 2 714416 754380
TU422885 False 3031 lncRNA 0.41 14 736266 754380
TU422886 True 4251 lncRNA 0.38 9 744704 754380

Neighbor

gene id symbol gene type direction distance location
LOC103025515 si:dkeyp-72e1.9,LOC108438022,LOC107721498,LOC107601283,LOC107688120 coding downstream 43711 556386 ~ 670705 (-)
pdxdc1 pdxdc1,LOC107601286 coding downstream 229514 452594 ~ 484902 (-)
LOC103041204 gspt1l,LOC108438004,LOC107721494,LOC100304847,LOC107654506,LOC107590378 coding downstream 265756 432157 ~ 448660 (-)
pirt pirt,LOC103042629 coding downstream 287396 424326 ~ 427020 (-)
nde1 nde1,LOC107654507,LOC107688124,LOC107601288 coding downstream 297034 392198 ~ 417382 (-)
rgs9 LOC108438013,LOC108278703 coding upstream 50269 804649 ~ 828631 (-)
LOC103045885 slc16a6,LOC108438015 coding upstream 146581 900961 ~ 911850 (-)
wipi1 wipi1,LOC107590389,LOC105899989,LOC107719990,LOC107688112 coding upstream 173672 928052 ~ 947398 (-)
LOC103021341 zgc:86896,LOC108436955,LOC108259475,LOC105899990,LOC107601274,LOC107590453,LOC104927173 coding upstream 195289 949669 ~ 965473 (-)
dus1l dus1l,LOC107654489,LOC107601270,LOC107688109,LOC107590391 coding upstream 274712 1029092 ~ 1043561 (-)
G307041 NA non-coding downstream 158158 555377 ~ 556258 (-)
G307005 LOC103040592,LOC108438007,LOC107721468,LOC108274424 non-coding downstream 186941 501883 ~ 527475 (-)
G307001 NA non-coding downstream 205475 494538 ~ 508941 (-)
G307006 NA non-coding downstream 206347 506373 ~ 508069 (-)
G306995 NA non-coding downstream 290283 422943 ~ 424133 (-)
G307130 cog1,LOC107601277,LOC107721521 non-coding upstream 39004 793384 ~ 794830 (-)
G307132 NA non-coding upstream 128842 883222 ~ 894718 (-)
G307144 NA non-coding upstream 162716 917096 ~ 922717 (-)
G307150 prkar1a,prkar1aa,LOC107721504,LOC107654492,LOC108274040,LOC107590390 non-coding upstream 215777 970157 ~ 1044317 (-)
G307190 csnk1d,LOC106596082,LOC102211647,LOC103154369,LOC103024472,LOC108259482,LOC107720075,LOC107590392,LOC107601268,LOC105899999,LOC107654491 non-coding upstream 309677 1064057 ~ 1078972 (-)
LOC111191304 NA other downstream 563165 83699 ~ 151251 (-)
smim22 smim22,si:ch1073-443f11.2,LOC107688153 other upstream 16740 771120 ~ 776215 (-)

Expression


Co-expression Network