G307150 (prkar1a,prkar1aa,LOC107721504,LOC107654492,LOC108274040,LOC107590390)


Basic Information

Item Value
gene id G307150
gene name prkar1a,prkar1aa,LOC107721504,LOC107654492,LOC108274040,LOC107590390
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 970157 ~ 1044317 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU422955
GATGAGAGGAGGATTCTGAAGATGTCTGTGGGCTGTAGACAAAGCATTAGAtcgatagatactttatttatcccaaagaAAATTTAGGAATATGTgttaaggaaaaagaaagaaacctttaagaatttatttttttattgcttgaCCTGCCATTTTGGACAATCTATACCAAAAAGGGTTACAgcacaataaaaacaaacaaaaaacctgAATACAATCACATAAGAGAGAGATAATAGAGAAATGGTCCTCTGACGGCCAACAGCAGCATAGACTGAAGGctttacaaaccacagagctgtataaaggtgtgtatgtgtgtgtactgggGCTTTTATAGTTTGAAGGAAGGGTTAATCAAATGCTGACAAATAAGCTAAATGCTAACCACTAGCCATGCTAAACAATGgctagctagcttttttttgctgttagccacattagcatgCCTGGTTAATTTGGTTGTAACAATATACAAGGTCGAATCTGGACTGTAAGTATGGAAAAACtagcaaaatacaaaagaatgggtttgttttgagaaaaaaagctaaaaacatgACCACTTTCCAAGGGTACCATTTATGCTAATACAAATGCCCCTTCATGACCGACAAAAAATTAGCCAAAGTGGAGCTGAatgatataaaaatagaaatcaaCAATTTATGATTAAACACTGATAGAATTTCAATTTAAACACTGCAGAATCACACCTTTATCTACCTGGATTTCCCACTCCAAGATTAGTTCTGCCCGTTTACACCAAATAATATGATAGGCAGTTATAATTACACTATTAAAACACATGATATGACCTGCGGGTGTCAATCTTTACCACTACAAAAAAAGACAGGGTAAACATGTCCTTGATTAAAATGTTTCACTAATTCAATTTCTTGAAACACCTGTGGAAAACTGATCGCAAGCTTTAAATGATAAACAAACTCATTTCCAATAATTCTTTACAAGAACTGACCAAAGCATGACAAAGCTACGAACTGAAGTAAAGAAAGATCTTTACAGTATTTAGCCAGGGAAATGTTGGCGCTGTGGAAAGGTTGTCAACCTTACACTGTTAAAGACACCAATAAAAAGACACTGAAGTCAACACACACCTTGAATCTGTGCTTATCAACAGCACAGTATAGaatcaaaaagaaagaaaattgctAACAGTTACAAAGTAAAATCAGGCACTTTCAAAAATTAAATTCATTACACTGACCCTACATAGATGTATTTTGGTAGAAGGGTCTAAAGGGGTCTAACACACAGAAATCACATATCACTCAGTTGAAAGCCTACACACACTTTActtaaaacaaaacagcaatTCATGgtcacaacatttaaaatatttaacaaaagcTTCAGCAAATGGTAACACTGCATTGGAAAGCACCACAGCGTGGAACAGAAAACTTCCAGCCTGTGAACTAGATGGTTGCATTAACCTCGTAACCAGTTCCTTAACACAAACTGTTCTGAAATATCGCAATGGCAATACGCACACATTCAGCTTGATGGCGTACAGCAAAAGAATAACATATGTTCAAGATGTCATCTGATATCATTTAATACTAAAGCTCTTAAGACTTTGACTGGTTTGACTATGagccacatttttttcttagaaaaaaaaaaacaaaatatgagaaaacaataaaagcaGAATGCAGAATAGTGAAACGCCTAATCAAGTTAACAAGCCAGTACTTGATAAATCTTAATTGTACCTTTAAAATGAATGACTACActtgaaaacaaaaacactcaAATGTATATGTGCTAATTTGTTTgacaagctaaaaaaaaccttcttcCCTCTGTGTAGCTTTAATCACATCTAAACTATGTAtaaactgaaatgtttgacACACATCCACCAAAATCCAACAAATACTtcattaaaattaaagcttgtcaatatattttaggtaataTCAACACAAAAAGCAATGTGAGgtaaatgagagaaaaagcTGTGAGATAAATGGtgtgagtggaaaaacaaagagagaaccACTTGGACCAGCAATAACAATAATGTGAAATAGCAGGAGcatatatagatttttatatttaaatttatatatttatatatgtataccaaactgtgcaaaaaatatgattatggtcatttacttttaatatattataatcatttacatatgcTATATATGTGCACCTACAACAAGAAAAGAGCAAAGCTGATCACCATGGTAACTATGGTGATGTTTAAAACTTCAGTACCCTTGACAAAACTAACGGAACTGACGGAACTCAAACACAACATAGAGCAGATTTGCCTTTGGCTTAACTATAGTCAAATGATGCAGAAGAAAACGAAAGGCGAAATACTTTCCCATGGTTCAAACAGGACACTTTCCCAGATGTACCCAGCAGTTCCTAGCCTTAAAGTCCTAAAATACAGGTTCTACACAGGGGGCTTTGAGTAATACcatctgaaaacacacttttgtaatttttgtaaagaacctttaaatgGGAAAGATcctttacattaaataattcctatagatttatctattttacaaaaaatatccTACTATGGCATTGCCCAAATAACTCTTTGCAGCACCTATATATTTAAGACTGTATGTTACAAACACCATCATAAACACTGTAATACAGTTTTGTGTTCTTTCATAAGTAGATCTGAAAAAAGGAGACCCTCCTATTCTTTCCCTCGCTTTACAACAATGACACGTCAAAGACCAAACTTCAGTTTTACAGTCTCCTTAGTGAGGACTCATATTCTTTCTAAATAAGCAGCCCAAACACAGGACGGAATACGTACCGGAGAAGGGAACTGAATGGGCACCTGGgagtgagtaaaataaacatatgaaagaaaagtaagaaaataaagCGATCTGCATTGGTGGACCCTGCGTTAGATAAAAAGAGGAAGTGGCCAGGGCGGCTTCGactcagacagacagtgagacaAAGCTGTTGTACTGCTGGATATTCCTCTTCAGTATGTCTGAGCATGGCCCCAGCACACGCTCGAATCGAGGGCGGTCCAGCTTTACGCACTTCAGTGGGCTGCGGGCGACCACGGTGGCAGCACGAGGGCGattcatcagcaaagcaatttCACCAAAGTAGTCGGAGGGTCCGAGTCTGCCCACCTCCACAAACTCCTCATTTTCAGAGCGCCTCTGCAGAACTGCAGCAGAACCCTCAAGGATGATGAAAAATTCATCTCCAGGCTGGCCTTGAACCACAATCTTCTGACCGTCCTCAAACTGCACCGTTTCGAGTGCATCGGCCACAGTGAGTCGCTCCCATTTATCCAGTGATTCTAAGATTGACACCTTGCTGAGGAATTCctcatacatcttcctctttCTCAGAGTGCTTCCCATCAGTATTCTCCTGTAGCTGTCTCTGTCGATGCCCCACAGCTTCACATTGGTTTTAGCTCGGACAGTCGCTGCCCTTGGGGTGCCGTAGATTAAAGCCAGTTCTCCAAAGCTGCCACCTTCCCCAATACTGGTCACCCATGCATTATTCACATACACATCCATCTCTCCCTGATCAATAACGTAGAAGTTATCACCCTCATCCCCTTGCTGAATAACGGTCTCTCCAGCAATGTAGTTCACAGGGAACATGGCATCAAATATATCACTTCTTTCATTATCATCAAGGTGGGCAAACAGCACATTCTTCTCAATCGCTTTAGCCAGCGCAGCCATCGTTTTATAATCTTTTGGAATAACCTTTCTGACGTAAGAAGCAGCATCCTCCTCTGTGTAAACCTCAGCACTGATGGCTCCACGGCGGCGACGGCCCTTAACCACAGGGTTCATGGGAGGTGAAATCTCATCTTCACGTGAATCCGAACGAGAGCTGGATTTCTGCTGGCCAACCATCTGCTTTGCTTCCTCCTTCTCAAGCCTCTCGAAGTAGTCTCTGAGGAAGGCCATGGGTCTTTCTGGCCTGGACGTGCACAGCTGCACAATGCAGTCCTTCAGCAGCTGCTGGATGCTGTGTTTCTGCACGTACTGCTCACATTCCCGCAAACTCCTCTCCTCCTCACTGCTCGTGCTGCTGGACGCCATGCTGACCTGAGAGCcgggcgctgctgctgctggggccTGTTCTGCTGTTTATATCTGTGTtttagtaagagagagagtgtgtgagtgtgtgtatttgtgtatgtgtgtgtgtgtgtgtccgacACTCCCTTCCGCTTAGCTT
>TU422956
gagaaagtgagagagaaaaataagagagagagATAATAGAGAAATGGTCCTCTGACGGCCAACAGCAGCATAGACTGAAGGctttacaaaccacagagctgtataaaggtgtgtatgtgtgtgtactgggGCTTTTATAGTTTGAAGGAAGGGTTAATCAAATGCTGACAAATAAGCTAAATGCTAACCACTAGCCATGCTAAACAATGgctagctagcttttttttgctgttagccacattagcatgCCTGGTTAATTTGGTTGTAACAATATACAAGGTCGAATCTGGACTGTAAGTATGGAAAAACtagcaaaatacaaaagaatgggtttgttttgagaaaaaaagctaaaaacatgACCACTTTCCAAGGGTACCATTTATGCTAATACAAATGCCCCTTCATGACCGACAAAAAATTAGCCAAAGTGGAGCTGAatgatataaaaatagaaatcaaCAATTTATGATTAAACACTGATAGAATTTCAATTTAAACACTGCAGAATCACACCTTTATCTACCTGGATTTCCCACTCCAAGATTAGTTCTGCCCGTTTACACCAAATAATATGATAGGCAGTTATAATTACACTATTAAAACACATGATATGACCTGCGGGTGTCAATCTTTACCACTACAAAAAAAGACAGGGTAAACATGTCCTTGATTAAAATGTTTCACTAATTCAATTTCTTGAAACACCTGTGGAAAACTGATCGCAAGCTTTAAATGATAAACAAACTCATTTCCAATAATTCTTTACAAGAACTGACCAAAGCATGACAAAGCTACGAACTGAAGTAAAGAAAGATCTTTACAGTATTTAGCCAGGGAAATGTTGGCGCTGTGGAAAGGTTGTCAACCTTACACTGTTAAAGACACCAATAAAAAGACACTGAAGTCAACACACACCTTGAATCTGTGCTTATCAACAGCACAGTATAGaatcaaaaagaaagaaaattgctAACAGTTACAAAGTAAAATCAGGCACTTTCAAAAATTAAATTCATTACACTGACCCTACATAGATGTATTTTGGTAGAAGGGTCTAAAGGGGTCTAACACACAGAAATCACATATCACTCAGTTGAAAGCCTACACACACTTTActtaaaacaaaacagcaatTCATGgtcacaacatttaaaatatttaacaaaagcTTCAGCAAATGGTAACACTGCATTGGAAAGCACCACAGCGTGGAACAGAAAACTTCCAGCCTGTGAACTAGATGGTTGCATTAACCTCGTAACCAGTTCCTTAACACAAACTGTTCTGAAATATCGCAATGGCAATACGCACACATTCAGCTTGATGGCGTACAGCAAAAGAATAACATATGTTCAAGATGTCATCTGATATCATTTAATACTAAAGCTCTTAAGACTTTGACTGGTTTGACTATGagccacatttttttcttagaaaaaaaaaaacaaaatatgagaaaacaataaaagcaGAATGCAGAATAGTGAAACGCCTAATCAAGTTAACAAGCCAGTACTTGATAAATCTTAATTGTACCTTTAAAATGAATGACTACActtgaaaacaaaaacactcaAATGTATATGTGCTAATTTGTTTgacaagctaaaaaaaaccttcttcCCTCTGTGTAGCTTTAATCACATCTAAACTATGTAtaaactgaaatgtttgacACACATCCACCAAAATCCAACAAATACTtcattaaaattaaagcttgtcaatatattttaggtaataTCAACACAAAAAGCAATGTGAGgtaaatgagagaaaaagcTGTGAGATAAATGGtgtgagtggaaaaacaaagagagaaccACTTGGACCAGCAATAACAATAATGTGAAATAGCAGGAGcatatatagatttttatatttaaatttatatatttatatatgtataccaaactgtgcaaaaaatatgattatggtcatttacttttaatatattataatcatttacatatgcTATATATGTGCACCTACAACAAGAAAAGAGCAAAGCTGATCACCATGGTAACTATGGTGATGTTTAAAACTTCAGTACCCTTGACAAAACTAACGGAACTGACGGAACTCAAACACAACATAGAGCAGATTTGCCTTTGGCTTAACTATAGTCAAATGATGCAGAAGAAAACGAAAGGCGAAATACTTTCCCATGGTTCAAACAGGACACTTTCCCAGATGTACCCAGCAGTTCCTAGCCTTAAAGTCCTAAAATACAGGTTCTACACAGGGGGCTTTGAGTAATACcatctgaaaacacacttttgtaatttttgtaaagaacctttaaatgGGAAAGATcctttacattaaataattcctatagatttatctattttacaaaaaatatccTACTATGGCATTGCCCAAATAACTCTTTGCAGCACCTATATATTTAAGACTGTATGTTACAAACACCATCATAAACACTGTAATACAGTTTTGTGTTCTTTCATAAGTAGATCTGAAAAAAGGAGACCCTCCTATTCTTTCCCTCGCTTTACAACAATGACACGTCAAAGACCAAACTTCAGTTTTACAGTCTCCTTAGTGAGGACTCATATTCTTTCTAAATAAGCAGCCCAAACACAGGACGGAATACGTACCGGAGAAGGGAACTGAATGGGCACCTGGgagtgagtaaaataaacatatgaaagaaaagtaagaaaataaagCGATCTGCATTGGTGGACCCTGCGTTAGATAAAAAGAGGAAGTGGCCAGGGCGGCTTCGactcagacagacagtgagacaAAGCTGTTGTACTGCTGGATATTCCTCTTCAGTATGTCTGAGCATGGCCCCAGCACACGCTCGAATCGAGGGCGGTCCAGCTTTACGCACTTCAGTGGGCTGCGGGCGACCACGGTGGCAGCACGAGGGCGattcatcagcaaagcaatttCACCAAAGTAGTCGGAGGGTCCGAGTCTGCCCACCTCCACAAACTCCTCATTTTCAGAGCGCCTCTGCAGAACTGCAGCAGAACCCTCAAGGATGATGAAAAATTCATCTCCAGGCTGGCCTTGAACCACAATCTTCTGACCGTCCTCAAACTGCACCGTTTCGAGTGCATCGGCCACAGTGAGTCGCTCCCATTTATCCAGTGATTCTAAGATTGACACCTTGCTGAGGAATTCctcatacatcttcctctttCTCAGAGTGCTTCCCATCAGTATTCTCCTGTAGCTGTCTCTGTCGATGCCCCACAGCTTCACATTGGTTTTAGCTCGGACAGTCGCTGCCCTTGGGGTGCCGTAGATTAAAGCCAGTTCTCCAAAGCTGCCACCTTCCCCAATACTGGTCACCCATGCATTATTCACATACACATCCATCTCTCCCTGATCAATAACGTAGAAGTTATCACCCTCATCCCCT

Function

symbol description
prkar1aa Predicted to enable cAMP binding activity; cAMP-dependent protein kinase inhibitor activity; and protein kinase A catalytic subunit binding activity. Predicted to be involved in negative regulation of cAMP-dependent protein kinase activity. Predicted to act upstream of or within phosphorylation and regulation of protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be part of cAMP-dependent protein kinase complex. Predicted to be active in cytoplasm. Is expressed in early embryonic cell; immature eye; neural tube; and somite. Human ortholog(s) of this gene implicated in Carney complex; acrodysostosis; and primary pigmented nodular adrenocortical disease. Orthologous to human PRKAR1A (protein kinase cAMP-dependent type I regulatory subunit alpha).
prkar1a Enables cAMP-dependent protein kinase inhibitor activity; enzyme binding activity; and protein domain specific binding activity. Involved in negative regulation of activated T cell proliferation and negative regulation of cAMP-dependent protein kinase activity. Located in cytoplasm and plasma membrane raft. Part of nucleotide-activated protein kinase complex. Colocalizes with axoneme and immunological synapse. Implicated in Carney complex; acrodysostosis; and primary pigmented nodular adrenocortical disease.

NR:

description
cAMP-dependent protein kinase type I-alpha regulatory subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU422955 True 4239 lncRNA 0.40 11 970157 986635
TU422956 False 3403 lncRNA 0.38 7 977900 1044317

Neighbor

gene id symbol gene type direction distance location
LOC103021341 zgc:86896,LOC108436955,LOC108259475,LOC105899990,LOC107601274,LOC107590453,LOC104927173 coding downstream 4684 949669 ~ 965473 (-)
wipi1 wipi1,LOC107590389,LOC105899989,LOC107719990,LOC107688112 coding downstream 22759 928052 ~ 947398 (-)
LOC103045885 slc16a6,LOC108438015 coding downstream 58307 900961 ~ 911850 (-)
rgs9 LOC108438013,LOC108278703 coding downstream 141526 804649 ~ 828631 (-)
LOC103025515 si:dkeyp-72e1.9,LOC108438022,LOC107721498,LOC107601283,LOC107688120 coding downstream 299452 556386 ~ 670705 (-)
slc16a3 slc16a3,si:ch211-234h8.7,LOC107684059,LOC102306792,LOC101481224 coding upstream 46234 1090551 ~ 1097798 (-)
scpep1 scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106 coding upstream 76582 1120899 ~ 1127466 (-)
G307144 NA non-coding downstream 47440 917096 ~ 922717 (-)
G307132 NA non-coding downstream 75439 883222 ~ 894718 (-)
G307130 cog1,LOC107601277,LOC107721521 non-coding downstream 175327 793384 ~ 794830 (-)
G307100 glyr1,LOC107590383,LOC107688117,LOC107721499 non-coding downstream 215777 714416 ~ 754380 (-)
G307097 ppl,LOC107601282,LOC107688119 non-coding downstream 238286 687873 ~ 731871 (-)
G307190 csnk1d,LOC106596082,LOC102211647,LOC103154369,LOC103024472,LOC108259482,LOC107720075,LOC107590392,LOC107601268,LOC105899999,LOC107654491 non-coding upstream 19740 1064057 ~ 1078972 (-)
G307200 engase non-coding upstream 57757 1102074 ~ 1106222 (-)
smim22 smim22,si:ch1073-443f11.2,LOC107688153 other downstream 193942 771120 ~ 776215 (-)
LOC111191304 NA other downstream 818906 83699 ~ 151251 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026599 prkar1aa coding NC_007114.7 CM002887.2 36262593 ~ 36272670 (-)