LOC103045885 (slc16a6,LOC108438015)


Basic Information

Item Value
gene id LOC103045885
gene name slc16a6,LOC108438015
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 900961 ~ 911850 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233736.3
ATCACATTTAAAGACCTCAGCGGCCGTGTCTTCCCGAGGAAACTCCAGCTTCTGCCCCGCCGTCTCTCCGCCTTTCGACAGGAATATTTGAGCCATGAAGAGAGTGGTGCCCATGCTGCGGGCGTGTACAAGCGCCAACGTATACCCACAGATTCCTGATGGGGGCTGGGGATGGGCTGTAGCTGTAGCCTTCTTCTTCACAGAAGTCTTCACCTACGGCATCATCAAAATCTTCGGGATCTTCCTGCAGGACTTAATGAGCCATTTTGAAGAGACCAACAGCCGAGTGTCATGGATCGTCTCTATCTGCGTCTTTGTGATGACATTCACAGccCCTTTATCCACGGTGCTGAGTAATCGCTTCGGATGCAGGCCAGTGGTCATGTTTGGGGGGTTACTGATCAGTCTGGGGACCATCAGCACAGCCTTCACACACTCCATTAACCAGATGTACATCACTGTGGGCCTTGTCTCAGGCCTGGGCTACTGCCTCACTTTCCTGCCTACAGTCACCATTCTCTCGCAGTACTTCAACAAGCGGCGCTCGCTCGTCACATCTGTCGCCTCAACTGGAGAGTGTTTCTCCCTCTTCGCGTTGACTCCAGCCCTGAGCATCCTAAAAGCTCATGTAGGCTGGAGGAACTGCCTGGTTGTGATTGGGCTAATGCAGGCATCACTCATTGCCTTTGGAGCACTGCTTAGACCCATTATCATCCAGCCCAAACTCTCTTCAcctgaggaggagaaggaggggcCGCAGTCTCCCCTCAAAAAGGCTGAAACCAAATATGAGCAGGAGAATGAGCTCACCAGAACATCCTACAGCTCTGTGGACTCCGGGGTGCAGTCTATCTCCTCTTCCAAAACAAACCTGGCTGAGGGTCAGAGTCCTAATCGGAGTGTGACGAAGCAAGATTCAGTGCAAACTGCAAAACTTGACATTCAGGAGCAGAAGGAGGTGCAAGAAGAGGAGGAATTTGAACATCCAGTCCTTCCTTCAACTCCTTTACAACAGCCCACAAAACAgcaggagaagaaggaggagccTGTGGTGGCTCAGCCAAAGCTGCTGGACTTTTCTGTTCTCAGGGACTGCAGCTTTATCTGCTACTCTCTCTTCGGCCTCTTTGCCACACTTGGCTTTTTTGCCCCACAACTCTACATAATTGATTTGAGTGTGAGCTGTGGACTGGAGCGTAATCAAGCCACGTACATGCTGTCTACCATGGCAGTGGCCGAAATATTCGGTCGTCTTTCCATCGGCTGGATACTGAACCGCCGGCCGGTTCGAAAAATCTACATCCTGCTGATCTGCACCATGTTGTTGAGCCTGGTGCTAGCGCTCTTCACTGCTGTCTCCGAGTTCTGGGGGCTGGCTTGCTGCTGTGCCGCTTTCGGCTTCCTGTTTGGCACTGTGGGCTCCACCCACATTCCCATGTTGGCTGAGGATGATGTGGTCGGCATCGATAGAATGTCGTCAGCTGTTggtgtttatgtttttattcagaGCTTCGCTGGCCTGGCTGGACCACCGCTAGCAGGAGCACTGGTGGACTTTACAAAAAACTACGGCTCAGCCTTCTACACCAGTGCGGCCGGTGTGGGCACGGGGGCGCTGTTTCTGGGATTGGTGCGACCCGCCAAATTAGGCCTGTTCTCCTGTCGGAGGAAGAACGTGACGCTGGAGGAAAAACAGGAAAACTCTCACAGTGAGGATACACCTAGTGACTTTCTGGAGGTGGACCTGATTGTGGAAAGCAGCCCTGCCAAGAGCCAGATGGATTCAGCAGCAATCTGAAAACACACATGCAGAAGAACACACTGACAGATGTGTTAAATTCCACATgaatctgatatatatatatatatatatatatatatatatatatatatatataaagttacaAAGTACAGAGGAGTGTAGAGCAGAAAAGTCTCCAATGCCCTGTTCATTTAATAACTGCAGAAATGCTGTTAGACCTGGTGTTTAGGTTTCCCATTACTATTGTCCATATAGCGTGTGCATAGTTTAAGATTCAcaagtgtttctgtttattttcaatAACAAAAGCTTGTTACAGGTTGAAATACTCTGAACTcggacacacacatatatatatatatacttttatatatgttAGTATATGTTTAcataagcatatatatatatagttcatgTTTCATGTGGAAATGATGTACATTATGGATTTAAATGTGATCACAAATGCACATTTTAACTTGAATGATTCACCCCAAAGATGGACATTCTCAATCCCTTTTTTTCAGTGCCTCATTTTCCTTTTTCCCTGTTTTCAATTTGGACCAAATGAAAAACCTCAGTGAACTCTGCTCTTTAGTGGCTGTGTGAAACGGTCACGAGTTTTATTTATGATAGCTTATCATAAGCCTTTATTTACACTGATTACAAACTAGCTAacctatataataatttatattaagtTAAAATACCTGCCTATGTGTGTTTACACCAGGGTGTTTCTGCCTGTTTGTGATTTACCCATTAGTATTTAATGAAAACCAGGCTCGTTTTAACTACACTACCTTCTCGGTGGAATTATCTGGACCACCTTTAATGGGGCCGCGGTCGCAGTGTGCTGCCGTGTCGCTGTAACAGCAGAGTGCTGtatgatttaaggtggaacggactgTAGCGCTGAGGAGCTGATGAGGCTAAAGGCGGCCTGTGGCTGGTGCGGGAATGTGAGGCTCTGAGAGAAACAGAGCCGCTGGAGGGCAGGGATCCTGTTATCTGCTCCAGCTTCTCATCTTCCAGCTTCTGTAATGATCTACAGTCTCTTCAGAAAAGCCCTGCTGTGTGATGGATGAAGAATGAGTGTAGCTCAAAATCgcttttatttattcctttataaATATGGTTCTTATAGAAAAGAACAGCGGACCTCCTCACCACACCAAAACCCGTTACAGAGTGACTGATCCATCCATCAGTTAGTGTGTTTAAttctgtttcatttatttttattctaactAATGATTTAGCGAACTTGATAAATAACGAGCGAGAAACAATCTGAATGATAAAATAGTAGCAAAAAGAGTGCGGTATGTTGTTgatttctgtaataaattacataaatcacgTCTGACTTGAATCTACACCTTTAAGACTTGAACAGCTCTGATGTATTCTGGTTTGTCAGGTATAATGTTATAACTGCACTGTATGACATCGTTTTGTATTAATTTTGGgcatcttattttcttttttatatatatgttgtgtaatgaaaacaaacaataatgtAGAATATGCCTTTGAAATGCTGCAACTACTGCAATTAGAGTATTATTTAAGCTAGAATAAATTCAATTGGTGATTTTA

Function

symbol description
slc16a6 Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: monocarboxylate transporter 7-like

GO: NA

KEGG:

id description
K08183 SLC16A6; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233736.3 True 3364 mRNA 0.45 7 900961 911850

Neighbor

gene id symbol gene type direction distance location
rgs9 LOC108438013,LOC108278703 coding downstream 72330 804649 ~ 828631 (-)
LOC103025515 si:dkeyp-72e1.9,LOC108438022,LOC107721498,LOC107601283,LOC107688120 coding downstream 230256 556386 ~ 670705 (-)
pdxdc1 pdxdc1,LOC107601286 coding downstream 416059 452594 ~ 484902 (-)
LOC103041204 gspt1l,LOC108438004,LOC107721494,LOC100304847,LOC107654506,LOC107590378 coding downstream 452301 432157 ~ 448660 (-)
pirt pirt,LOC103042629 coding downstream 473941 424326 ~ 427020 (-)
wipi1 wipi1,LOC107590389,LOC105899989,LOC107719990,LOC107688112 coding upstream 16202 928052 ~ 947398 (-)
LOC103021341 zgc:86896,LOC108436955,LOC108259475,LOC105899990,LOC107601274,LOC107590453,LOC104927173 coding upstream 37819 949669 ~ 965473 (-)
dus1l dus1l,LOC107654489,LOC107601270,LOC107688109,LOC107590391 coding upstream 117242 1029092 ~ 1043561 (-)
slc16a3 slc16a3,si:ch211-234h8.7,LOC107684059,LOC102306792,LOC101481224 coding upstream 178701 1090551 ~ 1097798 (-)
scpep1 scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106 coding upstream 209049 1120899 ~ 1127466 (-)
G307132 NA non-coding downstream 6243 883222 ~ 894718 (-)
G307130 cog1,LOC107601277,LOC107721521 non-coding downstream 106131 793384 ~ 794830 (-)
G307100 glyr1,LOC107590383,LOC107688117,LOC107721499 non-coding downstream 146581 714416 ~ 754380 (-)
G307097 ppl,LOC107601282,LOC107688119 non-coding downstream 169090 687873 ~ 731871 (-)
G307041 NA non-coding downstream 344703 555377 ~ 556258 (-)
G307144 NA non-coding upstream 5246 917096 ~ 922717 (-)
G307150 prkar1a,prkar1aa,LOC107721504,LOC107654492,LOC108274040,LOC107590390 non-coding upstream 58307 970157 ~ 1044317 (-)
G307190 csnk1d,LOC106596082,LOC102211647,LOC103154369,LOC103024472,LOC108259482,LOC107720075,LOC107590392,LOC107601268,LOC105899999,LOC107654491 non-coding upstream 152207 1064057 ~ 1078972 (-)
G307200 engase non-coding upstream 190224 1102074 ~ 1106222 (-)
smim22 smim22,si:ch1073-443f11.2,LOC107688153 other downstream 124746 771120 ~ 776215 (-)
LOC111191304 NA other downstream 749710 83699 ~ 151251 (-)

Expression


Co-expression Network