LOC103021341 (zgc:86896,LOC108436955,LOC108259475,LOC105899990,LOC107601274,LOC107590453,LOC104927173)


Basic Information

Item Value
gene id LOC103021341
gene name zgc:86896,LOC108436955,LOC108259475,LOC105899990,LOC107601274,LOC107590453,LOC104927173
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 949669 ~ 965473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233743.3
CCTGCACTTCACTCTTCAGCTTCATTCGTGTCGACTGCCCAGAGTCCACGGACACAGAACCAGCCTGAGACACACCTGAGGCTGCAGGAACTGATCCAGAGAAAAAGTTGTCTACTGTAGGATTGCCTCTGTAAGATCTGTGCTGTTCCTGCTGCATTCCAGGCCACCGTGTTGGAACATGTCTCTGTACAGCTTTGGTTTAGAGCCTCTGTCCTGCCATGCCTGGAACAAAGATCGAACGCAGATTGCGGTGAGCCCCAACAGCAGCACTGTGATCATTTAccagaagaaaggaaaagaatgGAGTAAAATCCATGAGCTAAAAGAGCACAGTGGACGGATCACAGGTATTGACTGGGCCCCGGAGTCGAACCGTATTGTGACGTGTGCCTCAGACAGGAACGCCTATGTCTGGACTCTGAAGGATGGTGTGTGGAAGCCCACTCTGGTCCTGGTTCGCATTAACAGGGCAGCAACGTGTGTGAAGTGGTCACCCCAGGAAAACAAGTTTGCACTGGGGAGTGGAGCCAAACTGATCTCAGTGTGTTACTTTGAGAAGGAGAACGACTGGTGGCTCAGTAAACACATCAAGAAGGGCATCTGCTCTACGGTGCTCAGTCTGGACTGGCATCCCAACAACATCCTGCTGGCTGCTGGCTCTGCTGACCTACACTGCAGGGTTTTCTCTGCTTACATAAAGGAAATCGAGGATAAGCCAGGTCCGACCTCATGGGGAGCTAAAATGCCGTTTGGAGAAGTTctgctggagcagaaggatGTGGGCGGATGGGTGCACAGCGTCGCTTTCTCACCGTCCGGTGACAGCCTGGCTTGGGTCAGCCACAACAGCGCCATTAGTGTAGCTGATGCTGCCCAGGGGAAAGAGGTTACCCAGCTGACCACGGAATATCTCCCCCTGCTTAGTGTGCTCTATGTTAATGAGACAGAGATTGTGGCTGCGGGCCATGACTGCTGTCCCTACCAGTTCTCCTACATGGGACCTGGAAAGCTGGACTTTGTTAAGAAGTTGGGGATCTCCAAGCAGACCTCCAAGAACAGCATGTCGGCCATGCAGCACTTCCGCAACCTGGACAAAAAGGCCACCACAGACGAGGAAGATAACGAACTGAACACTCTGCACCAGAACAGCATTACTCAGCTGTGTGTTGTGGAGGGACAGAAAGCCAAAGTGGAGAAGTTCAGTAGTGTGGGCTTAGATGGCGCTCTGGTCCTGTGGGATGTTAAGGTCTGAAACCCTGTAAACAAGCCGAGTCATGACTGAGTGATGTCCACACAGAACCACACCAAAGATTTCACCATATCATTTTAccactgtgtttttctgtctctgGCAGCAAGTTATTGACTCTAGAGAGTTATTACATTGTAGTTATTTCTATAATTAACAACAATAAAGGGTATTACTCCAGAATTGTCACTGTAGTATGTAGactatatgttttatatgtaacaGGCTATAAAATCTGACTTTTAtaatcagtgatttttttatttgtttgtttctccacatttcttaaaaaaattgaaacgGTCTTGTTGTCTACAATGAataaaagccatttttaaaagTC
>XM_022665893.1
CCTGCACTTCACTCTTCAGCTTCATTCGTGTCGACTGCCCAGAGTCCACGGACACAGAACCAGCCTGAGACACACCTGAGGCTGCAGGAACTGATCCAGAGAAAAAGTTGTCTACTGTAGGATTGCCTCTGTAAGATCTGTGCTGTTCCTGCTGCATTCCAGGCCACCGTGTTGGAACATGTCTCTGTACAGCTTTGGTTTAGAGCCTCTGTCCTGCCATGCCTGGAACAAAGATCGAACGCAGATTGCGGTGAGCCCCAACAGCAGCACTGTGATCATTTAccagaagaaaggaaaagaatgGAGTAAAATCCATGAGCTAAAAGAGCACAGTGGACGGATCACAGGTATTGACTGGGCCCCGGAGTCGAACCGTATTGTGACGTGTGCCTCAGACAGGAACGCCTATGTCTGGACTCTGAAGGATGGTGTGTGGAAGCCCACTCTGGTCCTGGTTCGCATTAACAGGGCAGCAACGTGTGTGAAGTGGTCACCCCAGGAAAACAAGTTTGCACTGGGGAGTGGAGCCAAACTGATCTCAGTGTGTTACTTTGAGAAGGAGAACGACTGGTGGCTCAGTAAACACATCAAGAAGGGCATCTGCTCTACGGTGCTCAGTCTGGACTGGCATCCCAACAACATCCTGCTGGCTGCTGGCTCTGCTGACCTACACTGCAGGGTTTTCTCTGCTTACATAAAGGAAATCGAGGATAAGCCAGGTCCGACCTCATGGGGAGCTAAAATGCCGTTTGGAGAAGTTctgctggagcagaaggatGTGGGCGGATGGGTGCACAGCGTCGCTTTCTCACCGTCCGGTGACAGCCTGGCTTGGGTCAGCCACAACAGCGCCATTAGTGTAGCTGATGCTGCCCAGGGGAAAGAGGTTACCCAGCTGACCACGGAATATCTCCCCCTGCTTAGTGTGCTCTATGTTAATGAGACAGAGATTGTGGCTGCGGGCCATGACTGCTGTCCCTACCAGTTCTCCTACATGGGACCTGGAAAGCTGGACTTTGTTAAGAAGTTGGGGATCTCCAAGCAGACCTCCAAGAACAGCATGTCGGCCATGCAGCACTTCCGCAACCTGGACAAAAAGGCCACCACAGACGAGGAAGATAACGAACTGAACACTCTGCACCAGAACAGCATTACTCAGCTGTGTGTTGTGGAGGGACAGAAAGCCAAAGTGGAGAAGTTCAGTAGTGTGGGCTTAGATGGCGCTCTGGTCCTGTGGGATGTTAAGGTAATGGCTCTTAAAGACTCTATAATGGTCTAGCTGGTTAAGCTGAGT
>XM_022665894.1
CTGCACTTCACTCTTCAGCTTCATTCGTGTCGACTGCCCAGAGTCCACGGACACAGAACCAGCCTGAGACACACCTGAGGCTGCAGGAACTGATCCAGAGAAAAAGGCCACCGTGTTGGAACATGTCTCTGTACAGCTTTGGTTTAGAGCCTCTGTCCTGCCATGCCTGGAACAAAGATCGAACGCAGATTGCGGTGAGCCCCAACAGCAGCACTGTGATCATTTAccagaagaaaggaaaagaatgGAGTAAAATCCATGAGCTAAAAGAGCACAGTGGACGGATCACAGGTATTGACTGGGCCCCGGAGTCGAACCGTATTGTGACGTGTGCCTCAGACAGGAACGCCTATGTCTGGACTCTGAAGGATGGTGTGTGGAAGCCCACTCTGGTCCTGGTTCGCATTAACAGGGCAGCAACGTGTGTGAAGTGGTCACCCCAGGAAAACAAGTTTGCACTGGGGAGTGGAGCCAAACTGATCTCAGTGTGTTACTTTGAGAAGGAGAACGACTGGTGGCTCAGTAAACACATCAAGAAGGGCATCTGCTCTACGGTGCTCAGTCTGGACTGGCATCCCAACAACATCCTGCTGGCTGCTGGCTCTGCTGACCTACACTGCAGGGTTTTCTCTGCTTACATAAAGGAAATCGAGGATAAGCCAGGTCCGACCTCATGGGGAGCTAAAATGCCGTTTGGAGAAGTTctgctggagcagaaggatGTGGGCGGATGGGTGCACAGCGTCGCTTTCTCACCGTCCGGTGACAGCCTGGCTTGGGTCAGCCACAACAGCGCCATTAGTGTAGCTGATGCTGCCCAGGGGAAAGAGGTTACCCAGCTGACCACGGAATATCTCCCCCTGCTTAGTGTGCTCTATGTTAATGAGACAGAGATTGTGGCTGCGGGCCATGACTGCTGTCCCTACCAGTTCTCCTACATGGGACCTGGAAAGCTGGACTTTGTTAAGAAGTTGGGGATCTCCAAGCAGACCTCCAAGAACAGCATGTCGGCCATGCAGCACTTCCGCAACCTGGACAAAAAGGCCACCACAGACGAGGAAGATAACGAACTGAACACTCTGCACCAGAACAGCATTACTCAGCTGTGTGTTGTGGAGGGACAGAAAGCCAAAGTGGAGAAGTTCAGTAGTGTGGGCTTAGATGGCGCTCTGGTCCTGTGGGATGTTAAGGTAATGGCTCTTAAAGACTCTATAATGGTCTAGCTGGTTAAGCTGAGT

Function

symbol description
zgc:86896 Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton and cytoplasm. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1A-like

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233743.3 True 1592 mRNA 0.48 10 949669 965473
XM_022665893.1 False 1294 mRNA 0.52 9 951155 965473
XM_022665894.1 False 1238 mRNA 0.52 9 951155 965472

Neighbor

gene id symbol gene type direction distance location
wipi1 wipi1,LOC107590389,LOC105899989,LOC107719990,LOC107688112 coding downstream 2271 928052 ~ 947398 (-)
LOC103045885 slc16a6,LOC108438015 coding downstream 37819 900961 ~ 911850 (-)
rgs9 LOC108438013,LOC108278703 coding downstream 121038 804649 ~ 828631 (-)
LOC103025515 si:dkeyp-72e1.9,LOC108438022,LOC107721498,LOC107601283,LOC107688120 coding downstream 278964 556386 ~ 670705 (-)
pdxdc1 pdxdc1,LOC107601286 coding downstream 464767 452594 ~ 484902 (-)
dus1l dus1l,LOC107654489,LOC107601270,LOC107688109,LOC107590391 coding upstream 63619 1029092 ~ 1043561 (-)
slc16a3 slc16a3,si:ch211-234h8.7,LOC107684059,LOC102306792,LOC101481224 coding upstream 125078 1090551 ~ 1097798 (-)
scpep1 scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106 coding upstream 155426 1120899 ~ 1127466 (-)
G307144 NA non-coding downstream 26952 917096 ~ 922717 (-)
G307132 NA non-coding downstream 54951 883222 ~ 894718 (-)
G307130 cog1,LOC107601277,LOC107721521 non-coding downstream 154839 793384 ~ 794830 (-)
G307100 glyr1,LOC107590383,LOC107688117,LOC107721499 non-coding downstream 195289 714416 ~ 754380 (-)
G307097 ppl,LOC107601282,LOC107688119 non-coding downstream 217798 687873 ~ 731871 (-)
G307150 prkar1a,prkar1aa,LOC107721504,LOC107654492,LOC108274040,LOC107590390 non-coding upstream 4684 970157 ~ 1044317 (-)
G307190 csnk1d,LOC106596082,LOC102211647,LOC103154369,LOC103024472,LOC108259482,LOC107720075,LOC107590392,LOC107601268,LOC105899999,LOC107654491 non-coding upstream 98584 1064057 ~ 1078972 (-)
G307200 engase non-coding upstream 136601 1102074 ~ 1106222 (-)
smim22 smim22,si:ch1073-443f11.2,LOC107688153 other downstream 173454 771120 ~ 776215 (-)
LOC111191304 NA other downstream 798418 83699 ~ 151251 (-)

Expression


Co-expression Network