pirt (pirt,LOC103042629)


Basic Information

Item Value
gene id pirt
gene name pirt,LOC103042629
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172846.1
NCBI id APWO02000057.1
chromosome length 1249306
location 424326 ~ 427020 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601911.2
GCCACTGAGAGTTCACAATCCACTCAGGACCCTCGCCGGACCTCCTTTATGGACTATTGAGtTTCAGGATTGTCTGCACCATGTCACTAATGCTGAGCGATGAGCGGAAGGGCAGTGTGGAGGAGGCGTGTTTACCGCCCCGAGAGACTTCTTTTAAATCAGCGCTGAAAAGGCGCTGGAACTACTTTCACAAGCCTCTGCTGTCTATTTTAATCGGGGCACTGGTGTTCGGCACTGGCACTGCCATGTCCCTGCTGTACTTCACCCACGTGGGGAACGTGCCCTACCTGGTGGGACCCCTGTTCCTGTCTATGGGACTGATGTTTCTGGTCACTGGGCTGGTTTGGATCCCCATCATTAAGCAGAAGATGGTGCACACTGCCATGAGTCAGATGGGACACGACAGACCCCTGCTGCCACCGCGCGGGAGCTGTGCCACCATATCCTAAGAAGAGTCCCACTGCAGtcctgaaatctgattggctgagccagACCTAATGCTGATGTGACATAATAAGACACCAGGAGTCAGGCTTTACAGTTCCTCTATAATTCAGTGTGTGAGATGAACACATTCAGAGTCGTGGTTTGGTGTGAAACTGTGCTTCATTTTATGACCCTGGTTTctttacagtggtggtgaatagGTGCCTTAGGTGCctacaacacacaaaaaagccATTTCATTACTGTCCAATACCACCAATTAACCTACATGTATCTTCTGAGTGCCATGTGTTTTGTTGCTGgcaataaaatagcaaaaatgaaataaaatgtagatatgaaaatctgtttttctgtagggactattttttgctgcacaacGTCTGTGTATATTCCTCCACCAGTTTAATGATATGCAATTTTAAAAACACGTTTTTAGACACAAAATAATTTCCTGTATTTCTTTAAAACTGTTTGGACATCAGATATTAGtgcatttatattcatatttataattcattttTGTGACAAGCTTTTTTTAGAGGTTTCTCTTCAAACATGATTTCCACAGTTTCACACCAACCCCAGTCAAAATAATTAAAGTCATTTCTTAATGcagaaaactttaaattaattttgtcAGGCCCACGTGTGAATGTTTAGTATCAATGAATCTGGCAACCCTAGCTTACTTCACGGCTTGGTGAAGGGGTTGTTCATTTCAAGTACTATtatgtattcatttaaaatgtattatttaaaatatatatatttattgaacattgatatattttatcatgtttgtttttgttagttAGTAAAAGCCATGTGAGGTCATGTGATTTCACTCGGCTTCTGCTAACAGCCCCCGAAGGCCCCtgatttttcttacattttattttctttcatcccaaaaaataattatttttgctttttattcttGGTGATGTATGTAAACACAGTCATATGCAAAATGTTAGGTACCTCAGTCAATTTACAAGAGCACActtctgtacattttattatactgtttatttatcagttattattagaaaatacatagaa

Function

symbol description
pirt Predicted to enable phosphatidylinositol bisphosphate binding activity and transmembrane transporter binding activity. Predicted to be involved in phosphatidylinositol-mediated signaling and positive regulation of cation channel activity. Predicted to act upstream of or within behavioral response to pain and response to heat. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
phosphoinositide-interacting protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601911.2 True 1512 mRNA 0.40 2 424326 427020

Neighbor

gene id symbol gene type direction distance location
nde1 nde1,LOC107654507,LOC107688124,LOC107601288 coding downstream 6944 392198 ~ 417382 (-)
abcc1 abcc1,LOC107654509 coding downstream 104487 276629 ~ 319839 (-)
LOC103044465 NA coding downstream 260388 152798 ~ 163938 (-)
tbc1d10b tbc1d10b coding downstream 290733 104745 ~ 133593 (-)
LOC103044774 LOC103044774,LOC108438020 coding downstream 323297 92506 ~ 101029 (-)
LOC103041204 gspt1l,LOC108438004,LOC107721494,LOC100304847,LOC107654506,LOC107590378 coding upstream 5137 432157 ~ 448660 (-)
pdxdc1 pdxdc1,LOC107601286 coding upstream 25574 452594 ~ 484902 (-)
LOC103025515 si:dkeyp-72e1.9,LOC108438022,LOC107721498,LOC107601283,LOC107688120 coding upstream 129366 556386 ~ 670705 (-)
rgs9 LOC108438013,LOC108278703 coding upstream 377629 804649 ~ 828631 (-)
LOC103045885 slc16a6,LOC108438015 coding upstream 473941 900961 ~ 911850 (-)
G306995 NA non-coding downstream 193 422943 ~ 424133 (-)
G306968 NA non-coding downstream 136791 286898 ~ 287535 (-)
G306951 NA non-coding downstream 191553 227533 ~ 232773 (-)
G306943 NA non-coding downstream 219878 204053 ~ 204448 (-)
G306934 NA non-coding downstream 306506 117064 ~ 117820 (-)
G307001 NA non-coding upstream 67518 494538 ~ 508941 (-)
G307005 LOC103040592,LOC108438007,LOC107721468,LOC108274424 non-coding upstream 74863 501883 ~ 527475 (-)
G307006 NA non-coding upstream 79353 506373 ~ 508069 (-)
G307041 NA non-coding upstream 128357 555377 ~ 556258 (-)
G307097 ppl,LOC107601282,LOC107688119 non-coding upstream 260853 687873 ~ 731871 (-)
LOC111191304 NA other downstream 273075 83699 ~ 151251 (-)
smim22 smim22,si:ch1073-443f11.2,LOC107688153 other upstream 344100 771120 ~ 776215 (-)

Expression


Co-expression Network