Gene
RNA
| Item | Value |
|---|---|
| gene id | G84404 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 10612194 ~ 10612415 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU96051 | True | 222 | lncRNA | 0.36 | 1 | 10612194 | 10612415 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_10586449_10594082 | NA | coding | upstream | 17752 | 10585818 ~ 10594442 (+) |
| CI01000013_10502138_10525511 | GRM3 | coding | upstream | 86520 | 10500690 ~ 10525674 (+) |
| CI01000013_10335904_10336688 | NA | coding | upstream | 275298 | 10335904 ~ 10336896 (+) |
| CI01000013_10261599_10283287 | NA | coding | upstream | 328227 | 10260271 ~ 10283967 (+) |
| CI01000013_09681047_09683275 | LRRC4, LRRC4.2 | coding | upstream | 928761 | 9681047 ~ 9683433 (+) |
| CI01000013_10756927_10790192 | FRMD4A | coding | downstream | 144512 | 10756927 ~ 10792761 (+) |
| CI01000013_10808688_10819703 | NA | coding | downstream | 196273 | 10808688 ~ 10819925 (+) |
| CI01000013_10821530_10827412 | SEPHS1, SEPHS1.L | coding | downstream | 209115 | 10821530 ~ 10827977 (+) |
| CI01000013_10865753_10884937 | MAPK8IP2 | coding | downstream | 253338 | 10865753 ~ 10886301 (+) |
| CI01000013_10916049_11031034 | NA | coding | downstream | 301280 | 10913695 ~ 11031159 (+) |
| G84403 | NA | non-coding | upstream | 965 | 10610973 ~ 10611229 (+) |
| G84389 | NA | non-coding | upstream | 8264 | 10603574 ~ 10603930 (+) |
| G84396 | NA | non-coding | upstream | 38890 | 10573093 ~ 10573304 (+) |
| G84379 | NA | non-coding | upstream | 54707 | 10557271 ~ 10557487 (+) |
| G84378 | NA | non-coding | upstream | 55273 | 10556712 ~ 10556921 (+) |
| G84405 | NA | non-coding | downstream | 1736 | 10614151 ~ 10614377 (+) |
| G84390 | NA | non-coding | downstream | 20980 | 10633395 ~ 10643805 (+) |
| G84386 | NA | non-coding | downstream | 32031 | 10644446 ~ 10657577 (+) |
| G84410 | NA | non-coding | downstream | 194894 | 10807309 ~ 10807963 (+) |
| G84250 | NA | other | upstream | 396232 | 10215127 ~ 10215962 (+) |
| G84215 | NA | other | upstream | 532858 | 10076454 ~ 10079336 (+) |
| G84194 | NA | other | upstream | 575401 | 10030608 ~ 10036953 (+) |
| G84005 | NA | other | upstream | 1009959 | 9601611 ~ 9602235 (+) |
| G82581 | NA | other | upstream | 1277246 | 9329329 ~ 9334948 (+) |
| G84768 | NA | other | downstream | 1557574 | 12169989 ~ 12170818 (+) |
| G84790 | NA | other | downstream | 1572527 | 12184942 ~ 12201975 (+) |
| G84864 | NA | other | downstream | 1752634 | 12365049 ~ 12375905 (+) |
