G84383


Basic Information

Item Value
gene id G84383
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10841716 ~ 10850104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU96018
GTATGATTTTTTTTTTTAATGAACAAAATTAATGGATACCTGAAGTGCAAAGGAACAAACAGAAACAGAGAGACAAGACTACAGTATAACTTGGATTAGCCTTAGCAATTATAGAAATTGACATGGGTTCTAACAGTGCTATTGCTTCTTAACTCAATATAACGAATCAAAGATTCAATATCAACAATGATATGAGCATGTGAATGTGGCCTAGCCCAATACCCTCATGGTCCCCTCAATATTTCTTTTGCCCCTAAACTTGCTACTACATATGGGAAAGAAAATCATCATTATGAAAATGAAACATATACATTCGTTTATGGACAAGGACAAATGCAAGAGCATCAGTTTGTCCATTCAAACACTCCCAAAGTGATTCTTAAGATGATGATCCCTCCAATTCACAGTATAATGATACTATCCCGCATTTATATTGTTCTTCTGCTGCCACTTTTCAACTGAAGACTCAAGCAAATACCTTTACCATTTGGTTGACCTAAACAAAGTATACTTGCTTTGGACAAGTAAAAAATATAAATAATCATAAAACAATTAAAACAGACAAACACATCAGCAGTTACAAGAACTTTGTGTTTAGAAATGGGACAAAGGCATTTGTCAGTTTAGTACTTACACACTTGTTTTGATTTTTGTTTTTTTAAGTGCAATTCCTTAATGTGCAGTTCAAACTGTATTCAAACCTATATACTGTACAAATGCATACAAGATGGGTATATAGTTATTGCTACATATAAATATGGCAAAGCAGAGATTTAACAATAAAAAAGATAATTAAAAGTAAAACACAGAAAAGCATAGCTCAAAACAATTATTTCCAATTATTATTTTTTTTTTTTTTTAGCTGAAATTGTTATATGAAATATAGCCATTCAAAATTATGACAAAGAAACAGTTTATGTGCCATTCTAAAATTAATTATTATGGACTTCTGAGTTTTTAAAAAAAAGATGTGCAATGTATTTCACAGTATGTAAATATAAGGATGCAACATGATTTCGTAAATCTTTTAAATTTTGGGGGAGGAAAAATAAACAAGCTACTACACTGTTTTTTAAGATGACAGGACAAACAAATAGTATATGAAACTAGGACACAAAAATGCAGACATCATTTGGACCCAGTGGATTATATTGTACTGATGATGGACGGATTGATTCTTAATAGAATTAATAGATAATGTTGACCACATATGTTAGATAAAATGTAAACATTAAATATTAAAAAAACCACAGCTACATTATATGCCTTATATAATGAAGCGGCACCAACATTAAATGAATTAAATCTAGGTTTCAATCAAACCATTTTTTTTTTTTTCCAAGTTGCAGATCATTTGTCACTTCTAATTTTTGCAAGGGACAAAAACAACTATAAAGCCCTACAAAATGAATGTAAGGCAGGATATCTTTGGACTTTTTCATGATTTAATAATAATAATAATGTTCCCCAGGATGAACCGTTCTTTAACAGTCTTTTTGTACTGTGCCCTTTCTTGAATGGTTTAAAAAACAATAGGTGATGCAAAATGATATCCTGAAGCATGCTCTGTGAGTGCAATTTAGGAAAAGAGCTTCTTCTGTTTGAAGTATGTGTCAAACCTGTGCTGTGCATAGTCCATGTATCCAAACTCGATTTTGGAGATCTTGGCTTGAATAATGGACCACAAACCCCAGAGGAAATGAGACGCAAGGGCAAACCGGTTTGCCTCAGTGATCATGTCCTCTTCTATCCTGGCTTGGTCTGCAGGTCCAATTCCCCCTCTTTCAGACAGATAGTGTCTGATAAAATGTAACTGCTGTTGTCGGTCAGGGTAATTCTCCACCTTTGCCTTGTAGAAGGGCCACTGGTCATATGTGTAGTCATATATCCATTCACAGAAATGATTCCCAAAATCAAAGCCTCTGTAGTTATAGCTGCTGTATTCAAAATCAATAAGCATTAATTTGTCAGATGAATTCTCTCGCCCATCCAACATGAGGATATTTCCTTCTTGTACATCATTATGGCAGAACACAACGGGAGAGGGAGTAGCTGCCAGCAGTGACCTCAGACTCTCTAGTTCTGCAGGAAGATCATACTTCATCAGCTTGTTAAATTTCTTAATGTGAGCTTCACGCACAAATTTTATTGTTTTAACTTGCTCCATGTACTTGTCAATGGTTCCAAACAGCCATTTGGGTTCCTTGTTGAATGGCATCACCATGCCGTGGAATCGTGCCATCTTACTGGCTATTTCAGCCGAGATCTCTGGGATCCCCAACTGCTCTGTACACAATCGATTACTAGGCAAGTACTGCTCTAGACGCCCTTCTGGGAAAATGCCATAGAGACGTGGGCCCAACTCTCTCTCTGCTAAAATGGCAAACATCACACTTTCCAAAACAAGAGAATCCACTCCCTGCAGAATGGCCCCGTAGATCCGAAGCAGAACCCTTCGAGGTTCGACCCCGGCAGGCTGAACATCATCTGGTAAACTGCACATGTAGAGCAGGTTACTGAGTCCTCCACTTACTATTTTGATCTGAAAGTCAGGTTCTGATATAGACTTCCATGACCCGGACAGAAAGTCTCGGCACCAGCTGAACGCCTTCCTTCTAGTATCCTGGTCCACTTCCACGTTACGCCCGTCCAGGTGGGACTCCGCTTCAGAGTCATCATCTCCGTTAGCGCCGCGGGGACTGGCAGCTCTCGGATGTCTCTCTTCGGCCACCATCAGGGAGTCTCCGCCAGCAGGTCCGTCCGAATCCGCGTCATCCTTAACGCATCTGCCTACATTTCCAGCACAATCACTCATGCACATCACTTTTTGGCCCGAATTCATGATCTTACGTGCTAGAAATCCAATGCTCCTTAAAGAGAGTGAGAGAACCGATCCGCTGTAACTAAGGACACCAAACCGCACCAGAAGCCGCATTCACTGAGCGTGAATGAACGCACATGCACCACAATCACCAGCGCACAGTGAAACATCTAATCCCTCGCGATATCAGAACGGCGTTAACGGCGAGAGAAACGGCCGTTGGATTAAAAATATCTGAAAAACCACTAGCTATTTTTCCACATTACCTTTCTTTAGATGTTACATTAACTACACAGACGTATTAACAAATTGTAAAGGCTGCTAATTAGACATTTTCGAACTACAACTTCCACTACTTCCTTGTGAAGTACCCGCTAGCTTTGTC
>TU96019
TGTTAAATTTCTTAATGTGAGCTTCACGCACAAATTTTATTGTTTTAACTTGCTCCATGTACTTGTCAATGGTTCCAAACAGCCATTTGGGTTCCTTGTTGAATGGCATCACCATGCCGTGGAATCGTGCCATCTTACTGGCTATTTCAGCCGAGATCTCTGGGATCCCCAACTGCTCTGTACACAATCGATTACTAGGCAAGTACTGCTCTAGACGCCCTTCTGGGAAAATGCCATAGAGACGTGGGCCCAACTCTCTCTCTGCTAAAATGGCAAACATCACACTTTCCAAAACAAGAGAATCCACTCCCTGCAGAATGGCCCCGTAGATCCGAAGCAGAACCCTTCGAGGTTCGACCCCGGCAGGCTGAACATCATCTGGTAAACTGCACATGTAGAGCAGGTTACTGAGTCCTCCACTTACTATTTTGATCTGAAAGTCAGGTTCTGATATAGACTTCCATGACCCGGACAGAAAGTCTCGGCACCAGCTGAACGCCTTCCTTCTAGTATCCTGGTCCACTTCCACGTTACGCCCGTCCAGGTGGGACTCCGCTTCAGAGTCATCATCTCCGTTAGCGCCGCGGGGACTGGCAGCTCTCGGATGTCTCTCTTCGGCCACCATCAGGGAGTCTCCGCCAGCAGGTCCGTCCGAATCCGCGTCATCCTTAACGCATCTGCCTACATTTCCAGCACAATCACTCATGCACATCACTTTTTGGCCCGAATTCATGATCTTACGTGCTAGAAATCCAATGCTCCTTAAAGAGAGTGAGAGAACCGATCCGCTGTAACTAAGGACACCAAACCGCACCAGAAGCCGCATTCACTGAGCGTGAATGAACGCACATGCACCACAATCACCAGCGCACAGTGAAACATCTAATCCCTCGCGATATCAGAACGGCGTTAACGGCGAGAGAAACGGCCGTTGGATTAAAAATATCTGAAAAACCACTAGCTATTTTTCCACATTACCTTTCTTTAGATGTTACATTAACTACACAGACGTATTAACAAATTGTAAAGGCTGCTAATTAGACATTTTCGAACTACAACTTCCACTACTTCCTTGTGAAGTACCCGCTAGCTTTGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU96018 False 3206 lncRNA 0.39 11 10841716 10850104
TU96019 True 1097 lncRNA 0.48 5 10846778 10850104

Neighbor

gene id symbol gene type direction distance location
CI01000013_10821530_10827412 SEPHS1, SEPHS1.L coding upstream 13739 10821530 ~ 10827977 (+)
CI01000013_10808688_10819703 NA coding upstream 21791 10808688 ~ 10819925 (+)
CI01000013_10756927_10790192 FRMD4A coding upstream 51227 10756927 ~ 10792761 (+)
CI01000013_10586449_10594082 NA coding upstream 247274 10585818 ~ 10594442 (+)
CI01000013_10502138_10525511 GRM3 coding upstream 316042 10500690 ~ 10525674 (+)
CI01000013_10865753_10884937 MAPK8IP2 coding downstream 15649 10865753 ~ 10886301 (+)
CI01000013_10916049_11031034 NA coding downstream 63591 10913695 ~ 11031159 (+)
CI01000013_11063977_11172626 NA coding downstream 213873 11063977 ~ 11172634 (+)
CI01000013_11224779_11252341 SHANK3A, SHANK3 coding downstream 374594 11224698 ~ 11253004 (+)
CI01000013_11271292_11274155 NA coding downstream 420502 11270606 ~ 11274754 (+)
G84410 NA non-coding upstream 33753 10807309 ~ 10807963 (+)
G84386 NA non-coding upstream 184139 10644446 ~ 10657577 (+)
G84390 NA non-coding upstream 197911 10633395 ~ 10643805 (+)
G84405 NA non-coding upstream 227339 10614151 ~ 10614377 (+)
G84444 NA non-coding downstream 55081 10905185 ~ 10905428 (+)
G84445 NA non-coding downstream 61069 10911173 ~ 10911440 (+)
G84464 NA non-coding downstream 161231 11011335 ~ 11011541 (+)
G84466 NA non-coding downstream 165290 11015394 ~ 11015705 (+)
G84470 NA non-coding downstream 174511 11024615 ~ 11024816 (+)
G84250 NA other upstream 625754 10215127 ~ 10215962 (+)
G84215 NA other upstream 762380 10076454 ~ 10079336 (+)
G84194 NA other upstream 804923 10030608 ~ 10036953 (+)
G84005 NA other upstream 1239481 9601611 ~ 9602235 (+)
G84768 NA other downstream 1319885 12169989 ~ 12170818 (+)
G84790 NA other downstream 1334838 12184942 ~ 12201975 (+)
G84864 NA other downstream 1514945 12365049 ~ 12375905 (+)

Expression


Co-expression Network