G311835



Basic Information


Item Value
gene id G311835
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NW_019172862.1
NCBI id APWO02000125.1
chromosome length 627872
location 16102 ~ 17401 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU429164
cgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctccccccctccgaaaaacgggtgaattttgaattatctttctgcctacgtaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggcggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacccctaaaacagtccattaaaaaagagctatacagagacacctgagcacttttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgagctttaagtag
>TU429165
cgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctccccccctccgaaaaacgggtgaattttgaattatctttctgcctacgtaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggcggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacccctaaaacagtccattaaaaaagagctatacagagacacctgagcacttttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgagctttaagtag
>TU429166
cgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctccccccctccgaaaaacgggtgaattttgaattatctttctgcctacgtaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggcggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacccctaaaacagtccattaaaaaagagctatacagagacacctgagcactttttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgagctttaaaggtcaccttccgtgaaaatccgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctccccccctccgaaaaacgggtgaattttgaattatctttctgcctacgtaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggcggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacccctaaaacagtccattaaaaaagagctatacagagacacctgagcacttttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgagctttaagtag
>TU429167
cgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctccccccctccgaaaaacgggtgaattttgaattatctttctgcctacgtaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggcggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacccctaaaacagtccattaaaaaagagctatacagagacacctgagcacttttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgagctttaagtag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU429164 False 549 lncRNA 0.46 2 16102 17401
TU429165 False 549 lncRNA 0.46 2 16102 17401
TU429166 True 1116 lncRNA 0.46 2 16102 17401
TU429167 False 549 lncRNA 0.46 2 16102 17401

Neighbor


gene id symbol gene type direction distance location
LOC111191400 NA coding upstream 665 18066 ~ 19805 (-)
LOC103046328 nme2a,LOC108430208,LOC106589447,LOC100135963,LOC100136353 coding upstream 117020 134421 ~ 148800 (-)
LOC107197026 NA coding upstream 607033 624434 ~ 624795 (-)
G311924 NA non-coding upstream 35188 52589 ~ 54348 (-)
G311930 NA non-coding upstream 89335 106736 ~ 107822 (-)
G311932 NA non-coding upstream 108983 126384 ~ 155954 (-)
G311947 NA non-coding upstream 162090 179491 ~ 185152 (-)
G311953 NA non-coding upstream 226242 243643 ~ 317971 (-)

Expression



Co-expression Network