G311932


Basic Information

Item Value
gene id G311932
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172862.1
NCBI id APWO02000125.1
chromosome length 627872
location 126384 ~ 155954 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU429287
atttcagacatttctcattttctgtaaataaatgctctaaatgagaatatttttatttgtaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagacactgattcagaaactgaaggggTCTCTgcatttttcccagagctgtgtatatatatcagaggtgtgaagtaatgaagtacaaatactttccTTTACTTAAGTAGACATACTTAACAGActcgttactcctgtttcatttcagctggttttcattcagGCTTCTCATCGTTTAATAAAACCCTCATCCAGATAaatcttttgtgacctcttggatgagttgtcacTGCCCTCTTAGGGTAATTGTTTTggtcggccggccactcctgggaaggttcaccactgttccaccaCTGTTTTtgccattagtgaataatagctctcactgtggttcactggagtcctaaaaatttagaaatgactttatatcCTTTTtgagactgatagatgatcaataactttCTTTCtcataaatctctccatccagatagagagaatctgattctgattggatgtagagaagtataaacataaaccattcccactccctattggtttaaaCTGTGAtctatcaacattaacattttaacattatagtcattatggcttttggTTAAAAGTGTTttggggaggaggggggggtagtgcactataagactctgtgggcgtggcctaaacttttctttttaatggcTTTGTTTTTtacccttacattacttttacttttatactttaaaagtagttttaataccagtacttttactctttcacagaagtattttattaaatcctggtatctataataatctacctacagagtaatgaatggagatacttactttggaatatatatatatatatatatatattacttttatatttcttGTTAGTTCTGAGCTGCTTTCTGTATACAGTATTACTTACATTCAGACTTTTTAAGAGATTTTTGGTATATCTAGATTAGTAGCATGTATTGTTTGCAATACATCATTAATACATAGTGTCagatatttatatttgacattTTATTAAGATAAAATGTTGCAAAATCAGTGTCTGACAGACTTGGTCCACGGAGTTTGTGtgcttttaaaatcatattgCTTATATGTacactaccggtcaaaagttttagaacacccctattgaACTGTTGTTTATTAGTCCAGTAGCTGCAGTGCTGTATGGCTGTAtttctatgatccggatcagttgatgactttgtttatttggagtttgtAAACgcttctccctctgtttggtttgttttcacacaggtataaacctaaacgcaccaaaatgcgcaccaataaaccacgtgagCACATTGTCTCTTCTGATTGGTGCTTCTGATGAGCTGTCTGGCGCGggagtaagaaagtaaatatagtgagaagattctgtgttccagcgaaTATATCTACATTGTTTTTAATGGGATGTGCAGCACACATGAACGCGTAGTAAACATAGAGTCatgcggctgtgagcagtgaatgctgcacagaCTGTgcttttagtgtgtaaacagcatagaGCAGCAGCAAAGACAACGTTTTGTTTGTAACTGTGTTAATTAGCATAATATGTtatctaatatatcagattaaactgcatcatatcagcagtttagcttaatttaaagtagtatattttatgtgtgggttggatcgagaccagatcacgttctcaccacaagagaATTAGAGCTCCTGAGTTCATTTGGGACCAAACTGAGACAATCGAACCACATTTAAgctctatccggacgggatttaTTTTcccagggggacgtctgtatataaaatatttcacacttctactctttagtgataaaactcctgcatccggactgcaattaaaaaaacaggaggaccagtgagtttttagtttttcatgacgttcagtagctcctccatttccactcgctgttgtgtttttttaacgtggatctccatggaaactgtggcgcgcccaaagtgtaattacggtgcgcggcagtggacaaatatctattttattaaaggcgaggagacgaaactcagagatgtgcgtccggacgggactaaaattagaaaaacagtagataattcagcctgtaattttctcagaggaccaTAAAAaaaccataaaagagaaaattacccagaacaccctgagaaactaatccagtccgttttaaccaaaccaaacagtgctggtgtaaaaaagCACCCTTAGACTCAgttcttaatcatgttaatctgagctaaaggttaaagctgctgtttccatgtgggtcagccagacgtcttcctgtagcaggtTTCCAAGAGTCTGAGTGTGAAGGTgtagaaacagtactcaccgctctcTCCcttctgtatctgtaatttccctaaagaaagaaagaacttctacttttagTTTCTATAGTTttaacagagttctctgtgtttctgggtCTTTTTCTAGatattattatgatgaaagtgcaTTATTTGAATCTATTTCCAAAAGATCAGTTTATTTCCGATGCTACTTAAGAGCTATAAACTGTTGCTAAAATTCCTACTTTTACAACATActaatatttttctctttttttattgcaatactaaaattactatttttttagtttttgttttatttgttttctttaatgctTCCTGGAAGTTTACTAAAAGTGGATTTTCAACCATTTCCGATTACTGACTAAACCTGAAGAGATTAAATTTTAAGAAAAGTAAAACTTTGGACCGGTAGTGTATGCATGGCatatatgcatgcatgcatCAGTGACTTTTCTACCTTTACCTTTCTACCTTCACCTTCACCTGTGTGCTTTTAGCATGCATGAGCCTCCCAGTCAGCACATCTACAGACGTTATCACTAAAATCAATAGAGAAAATCAGGCGTTCTGTATCTGCTGGATGTAGAAGAGGTCATATATTTgatatttctgatatttttgatattttttatgtttttctccaCTTTCTCTCATGCCTAGAGGGGCACGATGGGGTCTGAGATCGACAGGAAATGAAAGTGTGTCTCCTCAAAGAGCTCAGACACGGTAGCTTCAAAAAGTAAGTGCTATAAAGTAGCGGCAGCAGCAGAAAGGGCACACTCTCTGCCCTGCTGAAGAACCAGCTGAGAAGATAAGCTCAGGCCTGTTGGGAGGCTCACGTCTCGCCGCACCGCTTCTCCAGCGCCGGTCTGAGCCGCGGAGCGAGCCCTCGGGTTCTTACAGAGTCCGCGGGCCAGAGGCTGGAGTCCGGCGCCGCACGCCTCCCTGAATTCTGTGATTTAGTGCCCATCTGGAACTAAAGCCATCAGAGAAGcaataaaaaagagtaaatcTCACAGTGTTCAGCAGATTCACCAGGCTGGGGAGGTTTATTCTCCAGCAGAGCACCTCGAAATACCCCAAATAGACCACGAGACCCGGCCGGCAGACGGTGGCAGAATGGGGTCAGTCCAACATGGCGTCCAGCTGGTCGGCGAGATCATCAAACATGTTCCCGATGTCATCCAGGATGTTTCCTGCAGACTTCACCGTGTAAACGCC

Function

GO:

id name namespace
GO:0016407 acetyltransferase activity molecular_function
GO:0016410 N-acyltransferase activity molecular_function
GO:0004059 aralkylamine N-acetyltransferase activity molecular_function
GO:0008080 N-acetyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU429287 True 3643 lncRNA 0.39 4 126384 155954

Neighbor

gene id symbol gene type direction distance location
LOC111191400 NA coding downstream 106579 18066 ~ 19805 (-)
LOC107197026 NA coding upstream 468480 624434 ~ 624795 (-)
G311930 NA non-coding downstream 18562 106736 ~ 107822 (-)
G311924 NA non-coding downstream 72036 52589 ~ 54348 (-)
G311835 NA non-coding downstream 108983 16102 ~ 17401 (-)
G311947 NA non-coding upstream 23537 179491 ~ 185152 (-)
G311953 NA non-coding upstream 87689 243643 ~ 317971 (-)
G311988 NA non-coding upstream 449088 605042 ~ 605292 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G277459 NA non-coding NC_048567.1 CM023221.2 57590691 ~ 57591256 (+)
striped catfish (Pangasianodon hypophthalmus) G265820 NA non-coding NC_047611.1 CM018557.1 8661139 ~ 8661498 (-)