Fish Transcriptome and Expression Database

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ornamental fish

LOC107197026

Basic Information

Item	Value
gene id	LOC107197026
gene name	NA
gene type	coding
species	mexican tetra (Astyanax mexicanus)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NW_019172862.1
NCBI id	APWO02000125.1
chromosome length	627872
location	624434 ~ 624795 (-)
genome version	Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_001518328.2
TACCCTGTTTTGTAAGAGCTCACATGTTCTCGGGAGCTAACGAGAATCCTTGCAATCCTCACGTGCCGATCCATGAAGAAGCTTTGCCttttcacACAATAGAGAGCATTTGGAGCTCATGTTGCTCAGGACATTACAAGTAAAGAACTCTACACTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
XR_001518328.2	True	159	ncRNA	0.44	2	624434	624795

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC103046328	nme2a,LOC108430208,LOC106589447,LOC100135963,LOC100136353	coding	downstream	475634	134421 ~ 148800 (-)
LOC111191400	NA	coding	downstream	604629	18066 ~ 19805 (-)
G311988	NA	non-coding	downstream	19142	605042 ~ 605292 (-)
G311953	NA	non-coding	downstream	306463	243643 ~ 317971 (-)
G311947	NA	non-coding	downstream	439282	179491 ~ 185152 (-)
G311932	NA	non-coding	downstream	468480	126384 ~ 155954 (-)
G311930	NA	non-coding	downstream	516612	106736 ~ 107822 (-)

Expression

Co-expression Network