G84820


Basic Information

Item Value
gene id G84820
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 12233246 ~ 12233784 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU96549
CTTTGATGTCATACAGCGATCGGCTGTGCAGATCCTCTTCAAGTCGAACACACCTCCTGTCTAGTCCTTCTTTCACTAATAGGCTATATGCATGGTTACTTCTTCCTGGTTGTCGTTAAGCCAGCTCAGGCATTTCCGGTGAACTGTTAGCTGTTCATTCTGTAGTCGCTGTACATCGACACAAAACCATCAGTGGTTGACTTTTTAATGTTGTATTCATATTTTAATGCAGTTATCACATTTACCTAATTTGCCAATAAACCAATTCTATTGATTGCAATAAAGATGAAGCTATTGGGAACGCCGTGTCTGTAATTAGACACGCACATGCATTTTTTCCCCAGCACTTCAAATGTTATTTTTAATGTGATGACCACAAACATTACTTGTTCATCCTTCTGAGATTGTCCCCATTGTAAAACCGAACGTTTAAAAATGTAGGAAATTCAACATTTGATAGAAAACACTTATTTAAAAATAAAAAAGACAATAATTACCACTTTAACCAGCAGGTGGCGGCAAAGTAACATTTATTTGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96549 True 539 lncRNA 0.37 1 12233246 12233784

Neighbor

gene id symbol gene type direction distance location
CI01000013_12099659_12100829 GCSHA, GCSH coding upstream 131970 12097363 ~ 12101276 (+)
CI01000013_11937264_11960076 IQSEC3B coding upstream 272920 11936811 ~ 11960326 (+)
CI01000013_11904219_11919859 DDX11 coding upstream 313339 11903696 ~ 11919907 (+)
CI01000013_11847961_11850982 TNNI1C, TNNI1D, TNNI1 coding upstream 382158 11847961 ~ 11851088 (+)
CI01000013_11771727_11775044 MIOX coding upstream 458202 11771727 ~ 11775044 (+)
CI01000013_12260938_12264631 NA coding downstream 27154 12260938 ~ 12264631 (+)
CI01000013_12272623_12275499 NIP7, NIP7.L coding downstream 38839 12272623 ~ 12275721 (+)
CI01000013_12314589_12315317 RGS9BP coding downstream 79391 12313175 ~ 12315509 (+)
CI01000013_12379804_12398839 NA coding downstream 145737 12379521 ~ 12398839 (+)
CI01000013_12459982_12465113 PDCD10, PDC10, PDCD10B, PDCD10A, PDCD10.S coding downstream 226198 12459982 ~ 12465573 (+)
G84775 NA non-coding upstream 95136 12137191 ~ 12138110 (+)
G84769 NA non-coding upstream 101712 12127831 ~ 12131534 (+)
G84741 NA non-coding upstream 137787 12047870 ~ 12095459 (+)
G84736 NA non-coding upstream 192333 12039518 ~ 12040913 (+)
G84705 NA non-coding upstream 256207 11974147 ~ 11977039 (+)
G84867 NA non-coding downstream 143105 12376889 ~ 12377247 (+)
G84879 NA non-coding downstream 186119 12419903 ~ 12420119 (+)
G84898 NA non-coding downstream 242867 12476651 ~ 12476877 (+)
G84899 NA non-coding downstream 244469 12478253 ~ 12478528 (+)
G84919 NA non-coding downstream 289090 12522874 ~ 12524980 (+)
G84790 NA other upstream 31271 12184942 ~ 12201975 (+)
G84768 NA other upstream 62428 12169989 ~ 12170818 (+)
CI01000013_10756927_10790192 FRMD4A other upstream 1448489 10756927 ~ 10792761 (+)
G84250 NA other upstream 2017284 10215127 ~ 10215962 (+)
G84215 NA other upstream 2153910 10076454 ~ 10079336 (+)
G84864 NA other downstream 131265 12365049 ~ 12375905 (+)

Expression


Co-expression Network