LOC103031255 (patl1)


Basic Information

Item Value
gene id LOC103031255
gene name patl1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172899.1
NCBI id APWO02000093.1
chromosome length 238395
location 20870 ~ 29514 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237569.3
GCGgtcagagagagcgagaggcgCGTTCACAAGGAGTCAGTTCTGCGCGCGTGATGTCTCGCGCAGCGGTGTTTTTTGGGAAAAGCTAACGCTTCAGACGGATCATACATGTTCCGATTCCAGTCCTTTGATGATGACTGTactctggaggaggaggaggaagggggGCTGGTAGAGGAGGAAGATGAAATCGACCAGTTTAATGATGACACTTTTGGCGCCGGGGCAATTGATGATGACTGGCAGGAGGAGCATGCCCGGCTGGCAGAGCTGGATGGGCTGTTGGGAACAGGTGACTCCTCATCTGCCTCTGCCCCTCCTCCTGCCAAGAGTGCAGCACTCCCCTCCTCATTTCCAATATCCTTGTCTTCCTCGGTTCCTCCTCCTGGCTTAGGGGACAAGCCTGGAGGTGATCTAGCAGAGTCGCTGACTCGCCTCATCCTTGGCTCCGATCCTGCCATTGCTGGAGTGGGTGCTGCTGAGCCCGATAGGCCCAGCCTCACATCTGCACCTTCGAATCAGGCACTGCCTCCAGCATTGGGTGCCATGCCCAGTTCGTTGCTTAGCTACCAGCAACAGCAGCATCTGCTGCATAGAGGGGCAGGGCCGCTTCAGCAGATAAATTCTCACAGTATTTGGGAAAACAGTATGGGTTTTGGTCCTGTTAGTGTCGCTCCTGGACTTGTCACTCACATGGAGGACTCTCCATTGATGTCCATCATCAAAGAAGTGGGACTTCCCAAAAGAACACCACAAGTTGGCAGGGAGGAGGGTCGGGACTTATCGGAAAGAGTACCACCTCCTCGTTCCTCCTCCCCTGTAATTGGAAGTCCACCTGTAAGGGCAGTACCTATTGGAACGCCACCAAAACAACCCATGGGCCATGCTCTGAATCAGCAGATCCACCATCCCACAGCTGTGCATGTGAGAGCTCCAGTGCAGCACCGTTATCCCCATCCCTTCCCTGAGCGCCTCTCCCCCAACACCCTCCTCAACATTGCTAACTCTCCACTGTGCCGCCCTCCATTTCCAGGTGTAGGTCCAGTCCTGTCTCAAATACAGAGGGCCCAGTTGCTCAACTCTCAGGTTGGTCCTTTTCAAAGGGGTCCTGGTCCAGCTCCTCCAATGATGCctggtgggggtgggggcttCAGACCATTTTTTGGGCAGCCTCCTCCTAGAGTGGGCCCCCATCCACCTCACGCTCCGCCTCCTAACCATGCACCCATCCGGCACAACACCACGCACCTCCATCCCCAGCACCGCAGGATGCTTACCCAGAGGATGCAGAGCAGAGGCGATCGAGGTGGAGGTAGAGTGGGAGGAATGGACAGGAGAAGTAGGGACCCCTATAGTAATCTAATGACTCAGAAGGAGAAGGACTGGGTAGCCCGCATTCAAATGATGCAGCTCCAGAGCACTGACCCTTACCTGGACGACTACTACTATCAGAATTATTATGAGAAGATGGAAAAGCGTCAGGAGCGGGACAGAGACAGCAGCAGGAAGGAGCACACCACCAAACTCATCACCCCACAGGTGGCCAAGCTAGAGCACACCTACCGGCCAGTCCAGTTTGCTGGTTCTCTGGGTAAACTAACTGTCTCCAGTGTAAACAACCCCAGGAAGATGATCGACGCTGTGGTAACAACGCGTACTGATGATGAGgagaagagagaaaaacaggtgtGGAACAAAAGAAGGCAGATCCTTTACACTGTGGAAAAGATGTACAGTCTGTTGCTGGAGGTGCAGGACTTTGAGAAGAAGTTTCTGCAGACCCCTGAGGAGCAGAGAGAAACTATGCTGGAGCAgcacaagacacacacactacagctcTACAATTCACTCCGAGAGAAAGAGTGGGATGACCGAGtgagtgatgagcagtgtttgATGATCATGTCTGTACGAAAGGGGAAGCGCCTTGTCTCCAGGCTCATGCCCTTGCTCCCTCCGCCACAAGCTGCTGCCGTCGTCATGGCCGTTGCCCGCAACCTTCCAGCTCTAGCCAAGAAGGACAAGCAAGATCAGGTCCTTTGCTGGCTGGTGGAGCCGGTTGCAGTTGTAATCCAGTCCATGTCCAGCTCAGCTCTCACTGACCTATTACAAGAACTGCAGGGAAGTGAGGGGCAATTTCCACGAGTGCTGCAAAATAAGTTTGGTGTGACGCTGCTTTATCTGATTCTGAGTGAGGGTGAGAGAATGCAGAGCTCTGATCCCAACTGTCAACTCATGGATGACAATCGATGGACAGAGTTGGTATTCTCAGTGACGAGGGAGCTTTTGAAGGTCCCCTCCTCATCCCTCTCGCCTCCTCTTTTTACTCCTCCCaatcttctctccctcttttcccGTTATGTGGACAGGCAGAGACTAGAGCTGTTGCAGGAGAAGCTACAGATTACTGCCTTGTCCAGGTAGAAGTTACTTCACACATCGCGTCGCTGTTGAAGAGAGTCTGACTGTTAatgtctgtgtgggtgtgtatgtgcatatgtgtgcacaaacatttgtttgtgtgttggaGAAGTAATGTTTAGGGCTGATAAT

Function

symbol description
patl1 Predicted to enable RNA binding activity. Predicted to be involved in P-body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to be located in PML body; cytoplasm; and nuclear speck. Predicted to be active in P-body. Orthologous to human PATL1 (PAT1 homolog 1, processing body mRNA decay factor).

NR:

description
protein PAT1 homolog 1

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0033962 P-body assembly biological_process
GO:0000932 P-body cellular_component
GO:0016604 nuclear body cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12617 PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237569.3 True 2553 mRNA 0.53 18 20870 29514

Neighbor

gene id symbol gene type direction distance location
trnar-ucu_42 NA coding downstream 2885 32399 ~ 32490 (+)
LOC103030934 LOC108431796,LOC108260608,LOC107746728,LOC107603013,LOC107551804,LOC107676129,LOC107720316,LOC107692187 coding downstream 4552 34066 ~ 41331 (+)
trnar-ucu_43 NA coding downstream 6208 35722 ~ 35813 (+)
LOC111191686 acer2,LOC108431792,LOC105908550 coding downstream 36978 66492 ~ 79921 (+)
LOC103031985 NA coding downstream 146384 175898 ~ 188776 (+)
LOC111191687 NA non-coding downstream 27216 56730 ~ 63605 (+)
G323792 NA non-coding downstream 126990 156504 ~ 210818 (+)
G323808 NA non-coding downstream 187967 217481 ~ 217719 (+)
G323809 NA non-coding downstream 188677 218191 ~ 218470 (+)
G323812 NA non-coding downstream 189517 219031 ~ 220145 (+)

Expression


Co-expression Network