LOC111191686 (acer2,LOC108431792,LOC105908550)


Basic Information

Item Value
gene id LOC111191686
gene name acer2,LOC108431792,LOC105908550
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172899.1
NCBI id APWO02000093.1
chromosome length 238395
location 66492 ~ 79921 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667264.1
TTAGCGTGTTGGTTAACAGAGGTGTCAATCAAAGCGGCAGTGGGCGTGTCTCAGACTGATCCAGAGTTCTGTATCTCGACACTCGTTCAGAGATTTGTGAAGTGTTTGTGGGGCAGGTTTGTGGCTGGTCGCACGCGCGGTCACGTAAGCACGTGCACTCTGTTGTGGTGTTGGCTCGCGCTTCAATTGGATTAGGCGAGAAAGGAGCGCGCAGGTTCTGGAGCGCACAGAGCGCGTAAAGGATAAAGGCGGGCAGGCGCGCGCTGGGGGAGCGTGCGGGGGGAGCATGCGGAGCTGCGGGAGAGGAGCGCGtgcagcggcggcggcggagCAGGAATGAGGAGTTTGCGGCTGTGGGAGCAGCTTCAGCCCGGCAGCTCGGAGCTGGACTGGTGCGAGGGAAACTACCTGATCTACCCGAGCATAGCCGAGTTCTACAACACGATcagcaatattttgttttttattctgccGCCCATTTTGATTGGCCTATTTCAGCAATATGCAACACATTATAATCGTGGGATTTATGTCATATGGGCGCTGCTCGTCGTTGTCGGCATCGGCTCCACGTACTTCCATGCTACGCTCAGCTTCCTGGGTCAGATGCTGGATGAACTGGCCATTCTTTGGGTGCTGATGTGTGCTATTGCAATGTGGTTCCCTAAGAGATACCTGCCCAGAATATTCCAGAAGAACAGGTTTCTGTTTAAGCTGATGGTTGGCGTGCTGTCTGGCATCACCACGTGCTTGGCCTTTGTGAAGCCGGTGGTGAACTCCGTCTCTCTAATGACTCTGGGGATCCCCTGCACAGCTCTGCTCATTACCGAGCTCAGAAGATGTGACAACCCCCGGGTGTTAAAGCTGGGTTTAATCTCTGGAGTGTGGTGGGCTCTTGCTCTGCTCTGCTGGATCAGTGATCAGATATTCTGTGAGATGTGGTCTACTGTCAACTTCCCCTACCTGCACTGTTTCTGGCACATATTAATCTGTCTGGCTTCTTACCTGGGATGTGTGTGTTTCGCCTATTTCGACGCAGCAACAGAGGCTCCAGAGAGAGGACCGGTCATACTGTTCTGGCCCAGTGAGCGCTGGGCTTTCATAGGGGTACCGTACGTCATGCTGCTGCACACCCCACGGAAATCCTCCGTGAAGGTGACGTAGAGTCTAGGAATGATGGATATGAAGAGGCCTTATGTTGACTTGTTCAGGTGACATTCTTCAAATATGCAATAGAAATAACACTGAcatgctgcattccatttacctcagaagtcgGATTTCACAACTGGAAATGACATCacattgagttgagttgagtttgcAGCGTACagtatttcaaaacattttccaAAAGCTAATTAGCTTAAGGTTTTAGAGTTTACCACAACTGGATTGACAATCAATTCCTGGATTTTGACTGGCAAATTTAGCCACAATACATCCTGGGTTAGCACGGTCACATGTTATCGTTTTTAGCATTGTCACAGGTTAGCATAGTTAACATTGTCACATGTTATCATTTTTTGGCATTGTCCCAGGTTCTTGTTTTGTCACAGGTTACCATTTTTAGCATTGTCCCTGGTTATCGTTTTTAGCATTGTCACAGGTTAGCATAGTTAATATTGCCACAGGTTATCGTTTTTAGCATTGTCTCTGGTTATCGTTTTTAGCATTGTCACAGGTTAGCATAGTTAATATTGCCACAGGTTATCATTTTTAGCATTGTCCCTGGTTATCATTTTTAGCATTGTCCCTGGTTATTGTTTTTAGCATTGTCACAGGTTATCATTTTTAGCATTGTCTCTGGTTATCATTTTTAGCATTGTCTCTGGTTATCATTTTTAGCATTGTCCCTGGTTATTGTTTTTAGCATTGTCACAGGTTATCATTTTTAGCATTG

Function

symbol description
acer2 Predicted to enable chitooligosaccharide deacetylase activity and hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides. Predicted to act upstream of or within ceramide metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood cell and vascular endothelium. Orthologous to human ACER2 (alkaline ceramidase 2).

NR:

description
PREDICTED: alkaline ceramidase 2-like

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function

KEGG:

id description
K01441 ACER1_2, ASAH3; alkaline ceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667264.1 True 1903 mRNA 0.47 6 66492 79921

Neighbor

gene id symbol gene type direction distance location
LOC103030934 LOC108431796,LOC108260608,LOC107746728,LOC107603013,LOC107551804,LOC107676129,LOC107720316,LOC107692187 coding upstream 25161 34066 ~ 41331 (+)
trnar-ucu_43 NA coding upstream 30679 35722 ~ 35813 (+)
trnar-ucu_42 NA coding upstream 34002 32399 ~ 32490 (+)
LOC103031255 patl1 coding upstream 36978 20870 ~ 29514 (+)
LOC103031985 NA coding downstream 95977 175898 ~ 188776 (+)
LOC103032510 LOC108413971 coding downstream 109534 189455 ~ 207886 (+)
LOC111191687 NA non-coding upstream 2887 56730 ~ 63605 (+)
G323792 NA non-coding downstream 76583 156504 ~ 210818 (+)
G323808 NA non-coding downstream 137560 217481 ~ 217719 (+)
G323809 NA non-coding downstream 138270 218191 ~ 218470 (+)
G323812 NA non-coding downstream 139110 219031 ~ 220145 (+)

Expression


Co-expression Network