trnar-ucu_43


Basic Information

Item Value
gene id trnar-ucu_43
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172899.1
NCBI id APWO02000093.1
chromosome length 238395
location 35722 ~ 35813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnar-ucu_43
GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAATTcaaaggttgtgggttcgagtCCCACCAGAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ucu_43 True 73 tRNA 0.53 2 35722 35813

Neighbor

gene id symbol gene type direction distance location
trnar-ucu_42 NA coding upstream 3232 32399 ~ 32490 (+)
LOC103031255 patl1 coding upstream 6208 20870 ~ 29514 (+)
LOC111191686 acer2,LOC108431792,LOC105908550 coding downstream 30679 66492 ~ 79921 (+)
LOC103031985 NA coding downstream 140085 175898 ~ 188776 (+)
LOC103032510 LOC108413971 coding downstream 153642 189455 ~ 207886 (+)
LOC111191687 NA non-coding downstream 20917 56730 ~ 63605 (+)
G323792 NA non-coding downstream 120691 156504 ~ 210818 (+)
G323808 NA non-coding downstream 181668 217481 ~ 217719 (+)
G323809 NA non-coding downstream 182378 218191 ~ 218470 (+)
G323812 NA non-coding downstream 183218 219031 ~ 220145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnar-ucu-8 NA coding NC_048583.1 CM023237.2 22704704 ~ 22704795 (+)
eurasian perch (Perca fluviatilis) trnar-ucu_13 NA coding NC_053122.1 CM020919.1 19516853 ~ 19516945 (+)
striped catfish (Pangasianodon hypophthalmus) trnar-ucu_18 NA coding NC_047620.1 CM018566.1 13328052 ~ 13328143 (-)
tiger barb (Puntius tetrazona) trnar-ucu_73 NA coding NW_025048114.1 JAEQBD010000459.1 1411479 ~ 1411568 (+)
tiger barb (Puntius tetrazona) trnaa-agc_7 NA coding NC_056702.1 CM032071.1 26097181 ~ 26097253 (-)
mexican tetra (Astyanax mexicanus) trnar-ucu_18 NA coding NW_019172695.1 APWO02002293.1 4274 ~ 4363 (-)