trnat-agu_46


Basic Information

Item Value
gene id trnat-agu_46
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172925.1
NCBI id APWO02000034.1
chromosome length 7114648
location 729125 ~ 729198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnat-agu_46
GGCGCCGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATcctgggttcgaatcccagcgGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-agu_46 True 74 tRNA 0.57 1 729125 729198

Neighbor

gene id symbol gene type direction distance location
wdr88 wdr88 coding upstream 79 719305 ~ 729046 (+)
gpatch1 LOC107834818 coding upstream 10894 704804 ~ 718231 (+)
tex9 tex9 coding upstream 42960 677310 ~ 686165 (+)
LOC103027083 eif3j coding upstream 518679 202237 ~ 210446 (+)
LOC103026991 NA coding upstream 530284 167037 ~ 198841 (+)
lrp3 lrp3,LOC107696717,LOC107722388,LOC107741030,LOC107554613,LOC107657130 coding downstream 1055 730253 ~ 758128 (+)
rhpn2 rhpn2,LOC107696719 coding downstream 117877 847075 ~ 886405 (+)
slc7a9 slc7a9,bat1,LOC108432375,LOC106592435,LOC108432365 coding downstream 328562 1057760 ~ 1080295 (+)
nudt19 NA coding downstream 349719 1078917 ~ 1084697 (+)
ptpmt1 ptpmt1 coding downstream 403298 1132496 ~ 1135220 (+)
G334350 NA non-coding upstream 33952 693896 ~ 695173 (+)
G334342 NA non-coding upstream 87362 639830 ~ 641763 (+)
G334341 NA non-coding upstream 89470 639453 ~ 639655 (+)
G334340 rfx7,LOC107740453,LOC107689974 non-coding upstream 90162 638657 ~ 638963 (+)
G334339 rfx7 non-coding upstream 90623 628084 ~ 638502 (+)
G334403 celf1 non-coding downstream 363027 1092225 ~ 1097902 (+)
G334421 NA non-coding downstream 485235 1214433 ~ 1216519 (+)
LOC111191949 NA non-coding downstream 497130 1226328 ~ 1228559 (+)
G334582 NA non-coding downstream 594127 1323325 ~ 1324924 (+)
G334627 NA non-coding downstream 770046 1499244 ~ 1501839 (+)
cep89 cep89 other downstream 170277 899475 ~ 1037687 (+)
LOC103028535 LOC103035320,LOC108432398,LOC108259573,LOC108432364,LOC108432362,LOC108432363 other downstream 493464 1222662 ~ 1243011 (+)
LOC103040933 LOC103040933,LOC108434446,LOC106587114,LOC105888987,LOC107560099 other downstream 716465 1445663 ~ 1456887 (+)
LOC103042873 mdk other downstream 1162426 1891624 ~ 1919626 (+)
ptpn5 ptpn5,LOC108434435,LOC108259119,LOC107656192,LOC107722354,LOC107703306 other downstream 1730866 2460064 ~ 2485072 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnat-agu-153 NA coding NC_048593.1 CM023247.2 28591552 ~ 28591625 (+)
eurasian perch (Perca fluviatilis) trnat-agu_7 NA coding NC_053127.1 CM020924.1 17527235 ~ 17527308 (+)
striped catfish (Pangasianodon hypophthalmus) trnat-agu_18 NA coding NC_047619.1 CM018565.1 2535466 ~ 2535539 (-)
bowfin (Amia calva) AMCG00020677 NA coding CM030127.1 CM030127.1 29059415 ~ 29071096 (-)
tiger barb (Puntius tetrazona) trnat-agu_68 NA coding NC_056723.1 CM032092.1 13168563 ~ 13168636 (+)
tiger barb (Puntius tetrazona) trnav-aac_5 NA coding NC_056702.1 CM032071.1 27134799 ~ 27134871 (+)
mexican tetra (Astyanax mexicanus) trnat-agu_18 NA coding NW_019172695.1 APWO02002293.1 1979 ~ 2052 (-)