G48541


Basic Information

Item Value
gene id G48541
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 72389 ~ 96139 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU65600
aatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggaggagaacatgatgccaagatgcatgaaaaaaactgtgattaaaaaccaaccaggattattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcttcatcttttttgttatttcagtcatttctcattttctgtaaataaatgctctaaatgagaatattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65600 True 281 lncRNA 0.32 2 72389 96139

Neighbor

gene id symbol gene type direction distance location
LOC111192720 LOC108425021 coding downstream 25930 122069 ~ 131638 (+)
LOC111192744 NA coding downstream 167591 263730 ~ 269522 (+)
ajap1 ajap1 coding downstream 257897 354036 ~ 477296 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 1319135 1415274 ~ 1461698 (+)
pym1 pym1,LOC102777374 coding downstream 1664673 1760812 ~ 1764075 (+)
G48558 NA non-coding downstream 54795 150934 ~ 151459 (+)
G48579 NA non-coding downstream 113915 210054 ~ 210287 (+)
G48580 NA non-coding downstream 116260 212399 ~ 212710 (+)
G48583 NA non-coding downstream 120708 216847 ~ 217501 (+)
G48589 NA non-coding downstream 174896 271035 ~ 271342 (+)
G48714 NA other downstream 712016 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 2886707 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 4103800 4199939 ~ 4239873 (+)
G49475 NA other downstream 4148389 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 5523020 5619159 ~ 5627452 (+)

Expression


Co-expression Network