G48551 (rhoab,LOC108254710,LOC103027457,LOC108265880,LOC108425062,LOC107591788,LOC107679616,LOC106566794)


Basic Information

Item Value
gene id G48551
gene name rhoab,LOC108254710,LOC103027457,LOC108265880,LOC108425062,LOC107591788,LOC107679616,LOC106566794
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 63922 ~ 79321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU65617
ACTCCTTatagaaagtattttattacataAGATTACCAAGTCTAGTTTACAAATTCCAGTCACGTAATGACCGTGTGTATACCTTACTACACACGTGCTCATATGTACATTTATGTATACGTATCTACCCCACCGCCCCCCCaaatttccttcttttttttgcttccaAACAGTTCTTCAGTTTAAATCCCGATCTAAAACAACCCATAAAAATGATTCGTACATACAGATATTACAAATTACGTTCACTTATTCAGCCCTGTATCATGGTTGTTTTAAAAGTGAAAAGAATAAAAACCCCAGCGTTTTAAGGCCAggctgagcttttttttttttacgttggCAGCATGTTGAGACGGATGGCAGAATTTGGCAGGTGGGTGTGGCTTTAATGACGACATCACAAAAATCAGGTAAAGcatcataaaaacaaacaaacaaaaaacaaatccaaGTCCTCTGCAGTTTCTTAAATACTGATAAAACATTTCCAtgactagagagagagaaattaaaaataaaattaataaaaggaAAACTATGTTCTGGGAGTTTTACACTTTCGTCCGAAGCGTTTGGCGAGTTTGAGGAATGAGCGAGTGTTCGGACAGACGCACACTTTTTCCCCCCTCTCGGGGTTTCAGTCCAGTGCTGTGTTTTCACAGCAGAAGGCATTTGTTGCTCTTTTTACCCCTACGCGCCTGCAGCGCCGCCCTGGTGGCCATCTCGAACACCTCCCGCACGCCGTCCTTCGTTTTGGCAGAGCACTCCATGTAGCCAAAAGCTCCAATCCGATTGGCCATGTCCCTCCCCTCCTCAGCTTTCACTGGTTCTGCTTCATCTTAGCTAGCTCTCTACGCGTGTGCTCATCATTACGTAGATCCTTCTTGTTGCCCACGAGGATGATGGGTACATTCGGGCAGAAGTGTTTTACTTCAGGCGTCCACTTCTCTGGAATGTTTCTAAACTGTCCGGACTGTCAATAGAGAAGCACATGAGGATGACGTCAGTGTCTGGGTAGGACAGAGGCCTCAGCCTATCATAGTCTTCCTGTCCTGCAGTATCCCAAAGAGCCAGCTCCACCTGTTTGCTGTCCACCTCGATGTCGGCGACATAGTTCTCGAAGACAGTGGGAACGTAGACCTCAGGGAACTGGTCTTTACTGAAGACGATAAGCAAACAGGTTTTACCACAAGCTCCGTCTCCCACGATCACCAGCTTCTTACGGATGGCTGCCAtgtCTGAAGCGCGGTTTCTCCTCACTGCTGTCCAGCGGTCTGAGCTCGAGCTGCTCTAACGCCCCATACAATGAGCGAGTCGGGGACGGGCACGCGCACAACGCGGGCGCGGGCacag

Function

symbol description
rhoab Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within several processes, including Rho protein signal transduction; establishment of mitotic spindle localization; and post-anal tail morphogenesis. Predicted to be located in membrane. Predicted to be active in several cellular components, including cell cortex; cleavage furrow; and dendritic spine. Is expressed in several structures, including germ ring; nervous system; notochord; pleuroperitoneal region; and tail bud. Human ortholog(s) of this gene implicated in breast carcinoma. Orthologous to human RHOA (ras homolog family member A).

NR:

description
PREDICTED: transforming protein RhoA-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65617 True 1356 lncRNA 0.46 5 63922 79321

Neighbor

gene id symbol gene type direction distance location
LOC111192720 LOC108425021 coding downstream 42748 122069 ~ 131638 (+)
LOC111192744 NA coding downstream 184409 263730 ~ 269522 (+)
ajap1 ajap1 coding downstream 274715 354036 ~ 477296 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 1335953 1415274 ~ 1461698 (+)
pym1 pym1,LOC102777374 coding downstream 1681491 1760812 ~ 1764075 (+)
G48555 NA non-coding downstream 5453 84774 ~ 150432 (+)
G48558 NA non-coding downstream 71613 150934 ~ 151459 (+)
G48579 NA non-coding downstream 130733 210054 ~ 210287 (+)
G48580 NA non-coding downstream 133078 212399 ~ 212710 (+)
G48583 NA non-coding downstream 137526 216847 ~ 217501 (+)
G48714 NA other downstream 728834 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 2903525 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 4120618 4199939 ~ 4239873 (+)
G49475 NA other downstream 4165207 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 5539838 5619159 ~ 5627452 (+)

Expression


Co-expression Network