G48580


Basic Information

Item Value
gene id G48580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 212399 ~ 212710 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU65666
gcagaactttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaataatcaatatttggtggaataatcctggtttttaatcacagtttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataacttttatgctgctttactcctggtgcaaaaattcatgcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaatcaaagaaactcatcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65666 True 312 lncRNA 0.34 1 212399 212710

Neighbor

gene id symbol gene type direction distance location
LOC111192720 LOC108425021 coding upstream 80761 122069 ~ 131638 (+)
LOC111192744 NA coding downstream 51020 263730 ~ 269522 (+)
ajap1 ajap1 coding downstream 141326 354036 ~ 477296 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 1202564 1415274 ~ 1461698 (+)
pym1 pym1,LOC102777374 coding downstream 1548102 1760812 ~ 1764075 (+)
LOC103027674 LOC108425035 coding downstream 1560209 1772919 ~ 1786362 (+)
G48579 NA non-coding upstream 2112 210054 ~ 210287 (+)
G48558 NA non-coding upstream 60940 150934 ~ 151459 (+)
G48555 NA non-coding upstream 61967 84774 ~ 150432 (+)
G48541 NA non-coding upstream 116260 72389 ~ 96139 (+)
G48551 rhoab,LOC108254710,LOC103027457,LOC108265880,LOC108425062,LOC107591788,LOC107679616,LOC106566794 non-coding upstream 133078 63922 ~ 79321 (+)
G48583 NA non-coding downstream 4137 216847 ~ 217501 (+)
G48589 NA non-coding downstream 58325 271035 ~ 271342 (+)
G48596 NA non-coding downstream 144623 357333 ~ 357775 (+)
G48608 NA non-coding downstream 224888 437598 ~ 584273 (+)
G48610 NA non-coding downstream 237336 450046 ~ 471659 (+)
G48714 NA other downstream 595445 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 2770136 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 3987229 4199939 ~ 4239873 (+)
G49475 NA other downstream 4031818 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 5406449 5619159 ~ 5627452 (+)

Expression


Co-expression Network