G48589


Basic Information

Item Value
gene id G48589
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 271035 ~ 271342 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU65689
gtttctttgattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttacaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggaggagaacatgatgccaagatgcatgaaaaaaactgtgattaaaaaacaggtttattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65689 True 308 lncRNA 0.34 1 271035 271342

Neighbor

gene id symbol gene type direction distance location
LOC111192744 NA coding upstream 1513 263730 ~ 269522 (+)
LOC111192720 LOC108425021 coding upstream 139397 122069 ~ 131638 (+)
ajap1 ajap1 coding downstream 82694 354036 ~ 477296 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 1143932 1415274 ~ 1461698 (+)
pym1 pym1,LOC102777374 coding downstream 1489470 1760812 ~ 1764075 (+)
LOC103027674 LOC108425035 coding downstream 1501577 1772919 ~ 1786362 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 1728232 1999574 ~ 2001170 (+)
G48583 NA non-coding upstream 53534 216847 ~ 217501 (+)
G48580 NA non-coding upstream 58325 212399 ~ 212710 (+)
G48579 NA non-coding upstream 60748 210054 ~ 210287 (+)
G48558 NA non-coding upstream 119576 150934 ~ 151459 (+)
G48555 NA non-coding upstream 120603 84774 ~ 150432 (+)
G48596 NA non-coding downstream 85991 357333 ~ 357775 (+)
G48608 NA non-coding downstream 166256 437598 ~ 584273 (+)
G48610 NA non-coding downstream 178704 450046 ~ 471659 (+)
G48594 NA non-coding downstream 284448 555790 ~ 559237 (+)
G48671 NA non-coding downstream 317212 588554 ~ 588845 (+)
G48714 NA other downstream 536813 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 2711504 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 3928597 4199939 ~ 4239873 (+)
G49475 NA other downstream 3973186 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 5347817 5619159 ~ 5627452 (+)

Expression


Co-expression Network