G48596


Basic Information

Item Value
gene id G48596
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 357333 ~ 357775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU65700
TTAAGGCTGTATGGagatgatggtggtgtgatTATAAGGCTGTATGGAGATTATGGTGTGATTTTAAGGCTGTATGGagatgatggtggtgtgatTATAAGGCTGCATGGagatGATGGTGTGATTATAAGGCCATATGGAGATGATCGTGTGATTATAAGGCTGTATGGAGATGATGGTTTGATTATAAAGCTGTATGGAGATGGTGTGATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65700 True 214 lncRNA 0.40 2 357333 357775

Neighbor

gene id symbol gene type direction distance location
LOC111192744 NA coding upstream 87811 263730 ~ 269522 (+)
LOC111192720 LOC108425021 coding upstream 225695 122069 ~ 131638 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 1057499 1415274 ~ 1461698 (+)
pym1 pym1,LOC102777374 coding downstream 1403037 1760812 ~ 1764075 (+)
LOC103027674 LOC108425035 coding downstream 1415144 1772919 ~ 1786362 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 1641799 1999574 ~ 2001170 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 2002147 2359922 ~ 2362224 (+)
G48589 NA non-coding upstream 85991 271035 ~ 271342 (+)
G48583 NA non-coding upstream 139832 216847 ~ 217501 (+)
G48580 NA non-coding upstream 144623 212399 ~ 212710 (+)
G48579 NA non-coding upstream 147046 210054 ~ 210287 (+)
G48558 NA non-coding upstream 205874 150934 ~ 151459 (+)
G48608 NA non-coding downstream 79823 437598 ~ 584273 (+)
G48610 NA non-coding downstream 92271 450046 ~ 471659 (+)
G48594 NA non-coding downstream 198015 555790 ~ 559237 (+)
G48671 NA non-coding downstream 230779 588554 ~ 588845 (+)
G48673 NA non-coding downstream 231358 589133 ~ 589532 (+)
G48714 NA other downstream 450380 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 2625071 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 3842164 4199939 ~ 4239873 (+)
G49475 NA other downstream 3886753 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 5261384 5619159 ~ 5627452 (+)

Expression


Co-expression Network