G48673


Basic Information

Item Value
gene id G48673
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 589133 ~ 589532 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU65784
CGGCCGCGCCGGGCCGGGGAGAGATCACGCCGAGCCTGGGAGCGGTGGTATCGGGATGGGGAGCGATCACGTCGGGCTGGGGAACGGCCTTGCCGAACCTGGGAGCCGGTAACCGCCGAAATAGCAGGGGCATCGGGCACGGAGACGACGGATCGCAGCCTTGAAGTGGGGCGGGATGAAGCAATGGACGAGGAGCCGGAAAACAACTCCGAGTCCGAGGCAACTAGATCCAGATCCATGGTGAGTGAGTGACGGTGAACTTCGAAAACAGGTAACTTGGCAGTCACGCGAGGTTGAACGTCACAAAGGTGAGGGGAAACAGGGAGGTATATATATGGCCAAGGGGAGGAGCTTGTAATTGAGGCGCGCTCCATATACCAAAACTCTGTTAATACTTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65784 True 400 lncRNA 0.59 1 589133 589532

Neighbor

gene id symbol gene type direction distance location
ajap1 ajap1 coding upstream 111837 354036 ~ 477296 (+)
LOC111192744 NA coding upstream 319611 263730 ~ 269522 (+)
LOC111192720 LOC108425021 coding upstream 457495 122069 ~ 131638 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 825742 1415274 ~ 1461698 (+)
pym1 pym1,LOC102777374 coding downstream 1171280 1760812 ~ 1764075 (+)
LOC103027674 LOC108425035 coding downstream 1183387 1772919 ~ 1786362 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 1410042 1999574 ~ 2001170 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 1770390 2359922 ~ 2362224 (+)
G48671 NA non-coding upstream 288 588554 ~ 588845 (+)
G48608 NA non-coding upstream 4860 437598 ~ 584273 (+)
G48594 NA non-coding upstream 29896 555790 ~ 559237 (+)
G48610 NA non-coding upstream 117474 450046 ~ 471659 (+)
G48596 NA non-coding upstream 231358 357333 ~ 357775 (+)
G48678 NA non-coding downstream 47123 636655 ~ 636858 (+)
G48681 NA non-coding downstream 73793 663325 ~ 663663 (+)
G48683 NA non-coding downstream 118226 707758 ~ 707984 (+)
G48684 NA non-coding downstream 122321 711853 ~ 713531 (+)
G48689 NA non-coding downstream 147499 737031 ~ 743091 (+)
G48714 NA other downstream 218623 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 2393314 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 3610407 4199939 ~ 4239873 (+)
G49475 NA other downstream 3654996 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 5029627 5619159 ~ 5627452 (+)

Expression


Co-expression Network