G48730


Basic Information

Item Value
gene id G48730
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 824447 ~ 824677 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU65846
taggtgtgtattgtataaatgtatacagtTATTTTACATGTTGACTTATCTTtggtttaatcatgtttgaatcatgttttatccatgctttattcttattttattcttttatttccatttttattgttacatgtttgtcatgtcctgtctgtcctcgtgcctgtgtgtgttccacgtgacctgtgcccctgtgttctgttccagtacttttccacctgtgtcaatttgtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65846 True 231 lncRNA 0.35 1 824447 824677

Neighbor

gene id symbol gene type direction distance location
ajap1 ajap1 coding upstream 347151 354036 ~ 477296 (+)
LOC111192744 NA coding upstream 554925 263730 ~ 269522 (+)
LOC111192720 LOC108425021 coding upstream 692809 122069 ~ 131638 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 590597 1415274 ~ 1461698 (+)
pym1 pym1,LOC102777374 coding downstream 936135 1760812 ~ 1764075 (+)
LOC103027674 LOC108425035 coding downstream 948242 1772919 ~ 1786362 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 1174897 1999574 ~ 2001170 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 1535245 2359922 ~ 2362224 (+)
G48692 NA non-coding upstream 77269 746976 ~ 747178 (+)
G48689 NA non-coding upstream 81356 737031 ~ 743091 (+)
G48684 NA non-coding upstream 110916 711853 ~ 713531 (+)
G48683 NA non-coding upstream 116463 707758 ~ 707984 (+)
G48681 NA non-coding upstream 160784 663325 ~ 663663 (+)
G48754 NA non-coding downstream 100065 924742 ~ 925198 (+)
G48760 NA non-coding downstream 148616 973293 ~ 1070880 (+)
G48771 NA non-coding downstream 222137 1046814 ~ 1471342 (+)
G48781 NA non-coding downstream 366761 1191438 ~ 1242534 (+)
G48803 NA non-coding downstream 568232 1392909 ~ 1395623 (+)
G48714 NA other upstream 13182 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 2158169 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 3375262 4199939 ~ 4239873 (+)
G49475 NA other downstream 3419851 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 4794482 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 4952375 5777052 ~ 5789265 (+)

Expression


Co-expression Network