G48815


Basic Information

Item Value
gene id G48815
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1606475 ~ 1611232 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU65962
attagtgtgattgcagtaatgcaatcacagtattgatcttcttaagtcttattagtgtgattgcagtaatgcaatcacagtattgttcttcttaagtcttattcttcttcttcttattattattccacctgttttttgtcCGGTTAACTAGTGCCGCAGTTTTCGAAATATCGACTTCgttcaaaagagaaaacgtGCGTCCATATCGGGAATGGtgggcttgtatacagctttccgatcggacttacgtttttcgtaaaaacttcgtaagtACGCGTTTTTTgaccattgaaaatgaatgggcagAACTTTGCACGCCCGTGGACGTCGCAATTTTTGAAATACGAAGATGAAACCAATTGAGGacctgtagaacttattgagctCTTTCCGAAAATATGCGTTACGAAAAGTTACGACGTACGGATTTCGTACGATTGTCGTACGAAGTGGCCCCATTGGAATGAATGGGGCCAATCGGAGGACGGCAGCTAGATCGAAGGACAGGTAGCTAGaactccagtactgtgagtgtatggagcagctatgggataaaacagcattaggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgta
>TU65964
attagtgtgattgcagtaatgcaatcacagtattgatcttcttaagtcttattagtgtgattgcagtaatgcaatcacagtattgttcttcttaagtcttattcttcttcttcttattattattccacctgttttttgtcCGGTTAACTAGTGCCGCAGTTTTCGAAATATCGACTTCgttcaaaagagaaaacgtGCGTCCATATCGGGAATGGtgggcttgtatacagctttccgatcggacttacgtttttcgtaaaaacttcgtaagtACGCGTTTTTTgaccattgaaaatgaatgggcagAACTTTGCACGCCCGTGGACGTCGCAATTTTTGAAATACGAAGATGAAACCAATTGAGGacctgtagaacttattgagctCTTTCCGAAAATATGCGTTACGAAAAGTTACGACGTACGGATTTCGTACGATTGTCGTACGAAGTGGCCCCATTGGAATGAATGGGGCCATCGGAGGACGGCAGCTAGATCGAAGGACAGGTAGCTAGaactccagtactgtgagtgtatggagcagctatgggataaaacagcattaggtcaaaagtttggacaccccggccccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU65962 False 660 lncRNA 0.44 3 1606475 1610296
TU65964 True 961 lncRNA 0.48 4 1606475 1611232

Neighbor

gene id symbol gene type direction distance location
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 144777 1415274 ~ 1461698 (+)
ajap1 ajap1 coding upstream 1129179 354036 ~ 477296 (+)
LOC111192744 NA coding upstream 1336953 263730 ~ 269522 (+)
LOC111192720 LOC108425021 coding upstream 1474837 122069 ~ 131638 (+)
pym1 pym1,LOC102777374 coding downstream 149580 1760812 ~ 1764075 (+)
LOC103027674 LOC108425035 coding downstream 161687 1772919 ~ 1786362 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 388342 1999574 ~ 2001170 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 748690 2359922 ~ 2362224 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 854361 2465593 ~ 2474573 (+)
G48772 NA non-coding upstream 100189 1491321 ~ 1506286 (+)
G48771 NA non-coding upstream 135133 1046814 ~ 1471342 (+)
G48805 NA non-coding upstream 186273 1419732 ~ 1420202 (+)
G48803 NA non-coding upstream 210852 1392909 ~ 1395623 (+)
G48781 NA non-coding upstream 363941 1191438 ~ 1242534 (+)
G48822 NA non-coding downstream 28747 1639979 ~ 1727282 (+)
G48857 NA non-coding downstream 192525 1803757 ~ 1904244 (+)
G48868 NA non-coding downstream 224086 1835318 ~ 1851766 (+)
G48887 NA non-coding downstream 278675 1889907 ~ 1934861 (+)
G48891 NA non-coding downstream 282686 1893918 ~ 1895755 (+)
G48714 NA other upstream 795210 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 1371614 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 2588707 4199939 ~ 4239873 (+)
G49475 NA other downstream 2633296 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 4007927 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 4165820 5777052 ~ 5789265 (+)

Expression


Co-expression Network