G48857


Basic Information

Item Value
gene id G48857
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1803757 ~ 1904244 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66023
caagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaacaGCACTGTATATACCACTATACACATAATTTTCCCATTCTTTAACTGTAACTCCAAGTTATCATTCAGAGCTTGTTCTCCCATCTCCCctaatttttaaattatcttCTACAATTACCTTAAActaagatatacagctctgaaaaaaacaaaaaaacataagagagcacttcaaattgatgagtttctttgaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgatttttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaacaatgtgattaaaaaccaatcagggttattccaccaaatattgat

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66023 True 466 lncRNA 0.36 2 1803757 1904244

Neighbor

gene id symbol gene type direction distance location
LOC103027674 LOC108425035 coding upstream 17395 1772919 ~ 1786362 (+)
pym1 pym1,LOC102777374 coding upstream 39682 1760812 ~ 1764075 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 342059 1415274 ~ 1461698 (+)
ajap1 ajap1 coding upstream 1326461 354036 ~ 477296 (+)
LOC111192744 NA coding upstream 1534235 263730 ~ 269522 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 95330 1999574 ~ 2001170 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 455678 2359922 ~ 2362224 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 561349 2465593 ~ 2474573 (+)
klhl12 klhl12 coding downstream 574347 2478591 ~ 2506196 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding downstream 605900 2510144 ~ 2521419 (+)
G48822 NA non-coding upstream 76475 1639979 ~ 1727282 (+)
G48815 NA non-coding upstream 192525 1606475 ~ 1611232 (+)
G48772 NA non-coding upstream 297471 1491321 ~ 1506286 (+)
G48805 NA non-coding upstream 383555 1419732 ~ 1420202 (+)
G48803 NA non-coding upstream 408134 1392909 ~ 1395623 (+)
G48897 NA non-coding downstream 12351 1916595 ~ 1952370 (+)
G48936 NA non-coding downstream 92167 1996411 ~ 1997862 (+)
G48937 NA non-coding downstream 98124 2002368 ~ 2003124 (+)
G48958 NA non-coding downstream 149389 2053633 ~ 2053849 (+)
G48959 NA non-coding downstream 149646 2053890 ~ 2054152 (+)
G48714 NA other upstream 992492 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 1078602 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 2295695 4199939 ~ 4239873 (+)
G49475 NA other downstream 2340284 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3714915 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3872808 5777052 ~ 5789265 (+)

Expression


Co-expression Network