G48887


Basic Information

Item Value
gene id G48887
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1889907 ~ 1934861 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66057
atcacttaaaaatgatgagtttctttgattttaccaaattgaaaaactctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaccaaactgaactgcttgaatttttgcaccgggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcataaaaaaaaactgtgattaaaaacaagggttattccaccaaatattgatttctgatctcttaaaacttgagccatttctcattttctgtaaataaatgctctaaatgagaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaaca
>TU66058
tttctatgattttaccaaattaaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgtatgaaaaaaactgtgattgaaaaccaccaggattattccaccaaatattgatttctgaactcttaaaacttgagccatttctcattttctgtaaataaatgctctaaatgagaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66057 True 387 lncRNA 0.32 2 1889907 1934861
TU66058 False 370 lncRNA 0.32 2 1934421 1934861

Neighbor

gene id symbol gene type direction distance location
LOC103027674 LOC108425035 coding upstream 103545 1772919 ~ 1786362 (+)
pym1 pym1,LOC102777374 coding upstream 125832 1760812 ~ 1764075 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 428209 1415274 ~ 1461698 (+)
ajap1 ajap1 coding upstream 1412611 354036 ~ 477296 (+)
LOC111192744 NA coding upstream 1620385 263730 ~ 269522 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 64713 1999574 ~ 2001170 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 425061 2359922 ~ 2362224 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 530732 2465593 ~ 2474573 (+)
klhl12 klhl12 coding downstream 543730 2478591 ~ 2506196 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding downstream 575283 2510144 ~ 2521419 (+)
G48868 NA non-coding upstream 38141 1835318 ~ 1851766 (+)
G48822 NA non-coding upstream 162625 1639979 ~ 1727282 (+)
G48815 NA non-coding upstream 278675 1606475 ~ 1611232 (+)
G48772 NA non-coding upstream 383621 1491321 ~ 1506286 (+)
G48805 NA non-coding upstream 469705 1419732 ~ 1420202 (+)
G48936 NA non-coding downstream 61550 1996411 ~ 1997862 (+)
G48937 NA non-coding downstream 67507 2002368 ~ 2003124 (+)
G48958 NA non-coding downstream 118772 2053633 ~ 2053849 (+)
G48959 NA non-coding downstream 119029 2053890 ~ 2054152 (+)
G48991 NA non-coding downstream 263731 2198592 ~ 2198936 (+)
G48714 NA other upstream 1078642 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 1047985 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 2265078 4199939 ~ 4239873 (+)
G49475 NA other downstream 2309667 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3684298 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3842191 5777052 ~ 5789265 (+)

Expression


Co-expression Network