G48937


Basic Information

Item Value
gene id G48937
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2002368 ~ 2003124 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66122
cctagcaaccactggcaacaccttagaaatagaaacaccttagcaaccacctagcaacacctaagcaacctcTCTGACCTTAGCAATCAGTAGCTATATCAttgcaaccaccttagcaaccactggcaacaccttagaaatagaaacaccttagcaaccacctagcaacacataaGCAACCTCTCTGACCTTAGCAATCAGTAGTATCATTGCaaccaccctagcaaccactggcaacaccttagaaatagaaacaccttagcaaccacctagcaacacataaGCAACCTCTATCAGAGCAGGGCCACTGACCACACGCGCAGCAGCATTGCCGTAACAGGTTTCTTTTGGAAAGTTTCAACTCTTCTTATTTTTCCTGGTTTTATCTCATGCTAATTTAGTATTTATTCTCTTCACAGTGTATTTAACT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66122 True 430 lncRNA 0.43 3 2002368 2003124

Neighbor

gene id symbol gene type direction distance location
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding upstream 1198 1999574 ~ 2001170 (+)
LOC103027674 LOC108425035 coding upstream 216006 1772919 ~ 1786362 (+)
pym1 pym1,LOC102777374 coding upstream 238293 1760812 ~ 1764075 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 540670 1415274 ~ 1461698 (+)
ajap1 ajap1 coding upstream 1525072 354036 ~ 477296 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 356798 2359922 ~ 2362224 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 462469 2465593 ~ 2474573 (+)
klhl12 klhl12 coding downstream 475467 2478591 ~ 2506196 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding downstream 507020 2510144 ~ 2521419 (+)
LOC103026437 LOC108425081 coding downstream 524345 2527469 ~ 2583319 (+)
G48936 NA non-coding upstream 4506 1996411 ~ 1997862 (+)
G48897 NA non-coding upstream 49998 1916595 ~ 1952370 (+)
G48887 NA non-coding upstream 67507 1889907 ~ 1934861 (+)
G48857 NA non-coding upstream 98124 1803757 ~ 1904244 (+)
G48958 NA non-coding downstream 50509 2053633 ~ 2053849 (+)
G48959 NA non-coding downstream 50766 2053890 ~ 2054152 (+)
G48991 NA non-coding downstream 195468 2198592 ~ 2198936 (+)
G49102 NA non-coding downstream 265213 2268337 ~ 2315148 (+)
G49096 NA non-coding downstream 292543 2295667 ~ 2296359 (+)
G48714 NA other upstream 1191103 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 979722 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 2196815 4199939 ~ 4239873 (+)
G49475 NA other downstream 2241404 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3616035 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3773928 5777052 ~ 5789265 (+)

Expression


Co-expression Network