G48958


Basic Information

Item Value
gene id G48958
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2053633 ~ 2053849 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66146
GTGAGATTCTTCACTTGTCACAGCTGGATAATTTTTCCAGTACTGGTTTTACTCAGTATGATAACCATCAATTTCTACACTACAGTTTACCTGTAAACAGGATACCACAGCAGCCCCAGCGCAGGTCGTGCACAGCAGTGCATCACTGTGGGAAAATGATGCTTCAGGCGACATATTACAGagaatatattcatttttttaataagtaatGAAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66146 True 217 lncRNA 0.39 1 2053633 2053849

Neighbor

gene id symbol gene type direction distance location
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding upstream 52463 1999574 ~ 2001170 (+)
LOC103027674 LOC108425035 coding upstream 267271 1772919 ~ 1786362 (+)
pym1 pym1,LOC102777374 coding upstream 289558 1760812 ~ 1764075 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 591935 1415274 ~ 1461698 (+)
ajap1 ajap1 coding upstream 1576337 354036 ~ 477296 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 306073 2359922 ~ 2362224 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 411744 2465593 ~ 2474573 (+)
klhl12 klhl12 coding downstream 424742 2478591 ~ 2506196 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding downstream 456295 2510144 ~ 2521419 (+)
LOC103026437 LOC108425081 coding downstream 473620 2527469 ~ 2583319 (+)
G48937 NA non-coding upstream 50509 2002368 ~ 2003124 (+)
G48936 NA non-coding upstream 55771 1996411 ~ 1997862 (+)
G48897 NA non-coding upstream 101263 1916595 ~ 1952370 (+)
G48887 NA non-coding upstream 118772 1889907 ~ 1934861 (+)
G48891 NA non-coding upstream 157878 1893918 ~ 1895755 (+)
G48959 NA non-coding downstream 41 2053890 ~ 2054152 (+)
G48991 NA non-coding downstream 144743 2198592 ~ 2198936 (+)
G49102 NA non-coding downstream 214488 2268337 ~ 2315148 (+)
G49096 NA non-coding downstream 241818 2295667 ~ 2296359 (+)
G49109 NA non-coding downstream 261542 2315391 ~ 2317685 (+)
G48714 NA other upstream 1242368 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 928997 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 2146090 4199939 ~ 4239873 (+)
G49475 NA other downstream 2190679 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3565310 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3723203 5777052 ~ 5789265 (+)

Expression


Co-expression Network