G49096


Basic Information

Item Value
gene id G49096
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2295667 ~ 2296359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66371
gccacggGTCACACGCCATAATCTTATTTATGTTATTGTACAATCTGAATTTAtaacaaacaataataaaaaagattagTAAGATGTACAGTATTCCAATGATCTGAGCTAAGACAAATCACGCAAACAACCACACGTCAACTCCGGTGTTCTACTCAAgttcaaaaaatgagaaaaacaggTAGAGGTCATGGTGTGGCTTAAGCTGAGGCATGAGTTCTTTccagatggtgtgtgtgtgcgcgagtgtgtgtgtaagagattgagagagaaaagaagagagtaGGTATGTGCACTGGTGGATTCAAGGACGACGGAGATGACGAGAAGGTGAGCAGAGGGAGAAATGAAAGGATGCATACAAatgagaagacaaaaaaaacagagctaaaGACGGACAGACGGaggatgtggtgtgtgtgtgtgtgtgtgtctgcagtaAAGTCTCAGTTGGTGTATATTTGTCCCTCAGGCGGTTGTGGTAGTTTCATGTTCTCTTTGCACATCATGAGTCGTCTGAGCTCCTGCAGCACCACCCGAATACTGTAGGAGTTCTGCCACTTCGCCAAGGAGGACACTGCCCTCGTATCCACCTGTACAGACAGATaaaaagatagacagacagacagacagacaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66371 True 638 lncRNA 0.44 2 2295667 2296359

Neighbor

gene id symbol gene type direction distance location
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding upstream 294497 1999574 ~ 2001170 (+)
LOC103027674 LOC108425035 coding upstream 509305 1772919 ~ 1786362 (+)
pym1 pym1,LOC102777374 coding upstream 531592 1760812 ~ 1764075 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 833969 1415274 ~ 1461698 (+)
ajap1 ajap1 coding upstream 1818371 354036 ~ 477296 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 63563 2359922 ~ 2362224 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 169234 2465593 ~ 2474573 (+)
klhl12 klhl12 coding downstream 182232 2478591 ~ 2506196 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding downstream 213785 2510144 ~ 2521419 (+)
LOC103026437 LOC108425081 coding downstream 231110 2527469 ~ 2583319 (+)
G48991 NA non-coding upstream 96731 2198592 ~ 2198936 (+)
G48959 NA non-coding upstream 241515 2053890 ~ 2054152 (+)
G48958 NA non-coding upstream 241818 2053633 ~ 2053849 (+)
G48937 NA non-coding upstream 292543 2002368 ~ 2003124 (+)
G48936 NA non-coding upstream 297805 1996411 ~ 1997862 (+)
G49109 NA non-coding downstream 19032 2315391 ~ 2317685 (+)
G49112 NA non-coding downstream 43846 2340205 ~ 2342509 (+)
G49114 NA non-coding downstream 88067 2384426 ~ 2384635 (+)
G49118 NA non-coding downstream 94003 2390362 ~ 2390581 (+)
G49119 NA non-coding downstream 102123 2398482 ~ 2398829 (+)
G48714 NA other upstream 1484402 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 686487 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1903580 4199939 ~ 4239873 (+)
G49475 NA other downstream 1948169 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3322800 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3480693 5777052 ~ 5789265 (+)

Expression


Co-expression Network