G49117


Basic Information

Item Value
gene id G49117
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2428120 ~ 2429643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66401
cttaaaTGGTCAGAAAATTGAActgaaaaaacactcaaaattaCACTTTTCACATTACACAGGTGAGTATGCAgcagtaagatttttttttctgagtacACAATAATACCAGTTCATCACATAATCAAACCAATATGAACCAGAAACGATTTAGATTTATATAGGAACAATTAAATCCTCCAGGCTTTTGACGAAGCaacaagtgttaaaaaaaaatctcagctGCCGTTACAGACTCTacactgaatataataatagaagagaagaggtcgttttgttgccctttttaaattattttttaatactctCGCATCTCGAGAACAGCAATCAGTGACTAAATCCCCACAAAATAATgcgaaaaaaaatgcaaaaagaaaatgcatttatCGGTATTGCTAATGAAACGAAAGAAGAACAGGAGGAGATCAAGAGGAGAAGACACAGGCCAAATAAtatcatatatacagctctggaaaaaaatgaccactccagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattctcatttagagcatttatttacagaaaatgaaaaatgactgaaataacaaaaaaaacatttcagaggttctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagatcagaaacaatcaatatttggtggaataaccctggtttttatcacagtttttattcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggatcattttagcttggtttgatggcttgtgatcatccatcttcctctttattatattccagaggttttaaaatcagtaaaaccaaagaaactcattatttttaagtggtctttaatttttttccagagctgtatatatattatattgtatagtaTTATATGTATACATGAAGCCTATAACCTGTCCCTCAGCTCTGTACCAGAGTTTACCAAAAAACAGAAGTAAAAATACTGCAGTGTAGAAATGCACTGCTGCCACCTGCCTGCTGAACGCAGAGTTAAACACTTAACTCTATAATTAAAGAAGCTGCTGAGCGTTAAAGAAGCTGTTCCTCCTCCTGAAGATCCTCCGCCTCTATAAACTGAGGGAGGAAAGGGTTTGGGACCCCGAGGGTCCACCTGGCGTCGTTGTGCGTTCACGCGGCCTTTTCACGAGGTTAAAGAGACGAATTAACCCcgaaatattgtatattttaagcTTAAAAGTAACAATCAGGATGATACTGACAGAAGCTCCGCCCCCACCACCCTCTCCCctataatagtaatataataagtGAATTCCAGGCCTGTCACAATGATTACGTCTACAATTTAAAGATCATAAACTAAATCCTTAATATGATCCAACTATTAAATACTACTATAAATGACCCAGTATTAACTTAAACTCTTGCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66401 True 1524 lncRNA 0.35 1 2428120 2429643

Neighbor

gene id symbol gene type direction distance location
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding upstream 65896 2359922 ~ 2362224 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding upstream 426950 1999574 ~ 2001170 (+)
LOC103027674 LOC108425035 coding upstream 641758 1772919 ~ 1786362 (+)
pym1 pym1,LOC102777374 coding upstream 664045 1760812 ~ 1764075 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 966422 1415274 ~ 1461698 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 35950 2465593 ~ 2474573 (+)
klhl12 klhl12 coding downstream 48948 2478591 ~ 2506196 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding downstream 80501 2510144 ~ 2521419 (+)
LOC103026437 LOC108425081 coding downstream 97826 2527469 ~ 2583319 (+)
LOC103035089 NA coding downstream 154902 2584545 ~ 2597636 (+)
G49122 NA non-coding upstream 209 2425130 ~ 2427911 (+)
G49121 NA non-coding upstream 23392 2404515 ~ 2404728 (+)
G49120 NA non-coding upstream 25143 2402683 ~ 2402977 (+)
G49119 NA non-coding upstream 29291 2398482 ~ 2398829 (+)
G49118 NA non-coding upstream 37539 2390362 ~ 2390581 (+)
G49116 NA non-coding downstream 3156 2432799 ~ 2479371 (+)
G49146 NA non-coding downstream 227553 2657196 ~ 3150588 (+)
G49150 NA non-coding downstream 241174 2670817 ~ 2672813 (+)
G49151 NA non-coding downstream 251555 2681198 ~ 2681503 (+)
G49154 NA non-coding downstream 277380 2707023 ~ 2709154 (+)
G48714 NA other upstream 1616855 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 553203 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1770296 4199939 ~ 4239873 (+)
G49475 NA other downstream 1814885 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3189516 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3347409 5777052 ~ 5789265 (+)

Expression


Co-expression Network