faf1 (faf1,LOC107743872)


Basic Information

Item Value
gene id faf1
gene name faf1,LOC107743872
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2982846 ~ 3152050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66505
GGTTGATCGCTGTTGCTGCCGCCGTGTGTGTGCTATTGGTTGGGGGAGCTGAGTTAGAGCAGAACCGAGGAGCTGAGCGAAGACAGACCCCCTTACTGCCCCGCTGCGCTGACACAAACCCTGGGGTCCTGCAGGGTTAGAGGGCAGGAGACCCCCAAACCggactgagagtgtgtgtgtgtgtgtgagtgtgtgagagtcagGACGGCGCAGctggagaagcagcagcagccctacagcagcagcagcagcagcactgtgaTACTACAGCCATGGCCTCCGACTCTGGGAGCAACATGGACAGAGAGATGATTCTGGCCGACTTTCAGGCATGCACAGGAATTGACAACATTGCAGAGGCAATCGCTCTCCTAGAACTGAACAACTGGGACTTGGTGgcaGCCATCAACGGTGTGATTCCGCAAGAAAATGGCATCTTACAAAGCACTTTCACCAGCGAGGGCTCTCAGACCAGCCCGTTCGGAGAGAACAgccaagcagcagcagcagccacgGCACCTACAGCACCTCCATCGAGCGCAGCATCATCTTCACCTccgtcctcttcctcctcctcctcctcctcagcctTCTGCCCCGTCCTGCCCTCCCGCCACATCGTGGAGAGACAGCCGCGCATGCTCAACTTCCACATAGAGTACCGCACGCGCTCAGTAGAGGTGGTGCTGGAGGAGGCTAGCACTGTGGGTG
>TU66506
GGTTGATCGCTGTTGCTGCCGCCGTGTGTGTGCTATTGGTTGGGGGAGCTGAGTTAGAGCAGAACCGAGGAGCTGAGCGAAGACAGACCCCCTTACTGCCCCGCTGCGCTGACACAAACCCTGGGGTCCTGCAGGGTTAGAGGGCAGGAGACCCCCAAACCggactgagagtgtgtgtgtgtgtgtgagtgtgtgagagtcagGACGGCGCAGctggagaagcagcagcagcactgtgaTACTACAGCCATGGCCTCCGACTCTGGGAGCAACATGGACAGAGAGATGATTCTGGCCGACTTTCAGGCATGCACAGGAATTGACAACATTGCAGAGGCAATCGCTCTCCTAGAACTGAACAACTGGGACTTGGTGgcaGCCATCAACGGTGTGATTCCGCAAGAAAATGGCATCTTACAAAGCACTTTCACCAGCGAGGGCTCTCAGACCAGCCCGTTCGGAGAGAACAgccaagcagcagcagcagccacgGCACCTACAGCACCTCCATCGAGCGCAGCATCATCTTCACCTccgtcctcttcctcctcctcctcctcctcagcctTCTGCCCCGTCCTGCCCTCCCGCCACATCGTGGAGAGACAGCCGCGCATGCTCAACTTCCACATAGAGTACCGCACGCGCTCAGTAGAGGTGGTGCTGGAGGAGGCTAGCACTGTGGGTG
>TU66507
GGAAAGTCATAAGAAGAAGTGTGCGGCGGATTTGCGCAGCCCTGCGTTAATCGAGCGCATCCCTGTGCTGGGCCGGTTGGTTGATCGCTGTTGCTGCCGCCGTGTGTGTGCTATTGGTTGGGGGAGCTGAGTTAGAGCAGAACCGAGGAGCTGAGCGAAGACAGACCCCCTTACTGCCCCGCTGCGCTGACACAAACCCTGGGGTCCTGCAGGGTTAGAGGGCAGGAGACCCCCAAACCggactgagagtgtgtgtgtgtgtgtgagtgtgtgagagtcagGACGGCGCAGctggagaagcagcagcagccctacagcagcagcagcagcagcactgtgaTACTACAGCCATGGCCTCCGACTCTGGGAGCAACATGGACAGAGAGATGATTCTGGCCGACTTTCAGGCATGCACAGGAATTGACAACATTGCAGAGGCAATCGCTCTCCTAGAACTGAACAACTGGGACTTGGTGgcaGCCATCAACGGTGTGATTCCGCAAGAAAATGGCATCTTACAAAGCACTTTCACCAGCGAGGGCTCTCAGACCAGCCCGTTCGGAGAGAACAgccaagcagcagcagcagccacgGCACCTACAGCACCTCCATCGAGCGCAGCATCATCTTCACCTccgtcctcttcctcctcctcctcctcctcagcctTCTGCCCCGTCCTGCCCTCCCGCCACATCGTGGAGAGACAGCCGCGCATGCTCAACTTCCACATAGAGTACCGCACGCGCTCAGTAGAGGTGGTGCTGGAGGAGGCTAGCACTGTGGGTG
>XM_022671018.1
ATCGAGCGCATCCCTGTGCTGGGCCGGTTGGTTGATCGCTGTTGCTGCCGCCGTGTGTGTGCTATTGGTTGGGGGAGCTGAGTTAGAGCAGAACCGAGGAGCTGAGCGAAGACAGACCCCCTTACTGCCCCGCTGCGCTGACACAAACCCTGGGGTCCTGCAGGGTTAGAGGGCAGGAGACCCCCAAACCggactgagagtgtgtgtgtgtgtgtgagtgtgtgagagtcagGACGGCGCAGctggagaagcagcagcagccctacagcagcagcagcagcagcactgtgaTACTACAGCCATGGCCTCCGACTCTGGGAGCAACATGGACAGAGAGATGATTCTGGCCGACTTTCAGGCATGCACAGGAATTGACAACATTGCAGAGGCAATCGCTCTCCTAGAACTGAACAACTGGGACTTGGTGgcaGCCATCAACGGTGTGATTCCGCAAGAAAATGGCATCTTACAAAGCACTTTCACCAGCGAGGGCTCTCAGACCAGCCCGTTCGGAGAGAACAgccaagcagcagcagcagccacgGCACCTACAGCACCTCCATCGAGCGCAGCATCATCTTCACCTccgtcctcttcctcctcctcctcctcctcagcctTCTGCCCCGTCCTGCCCTCCCGCCACATCGTGGAGAGACAGCCGCGCATGCTCAACTTCCACATAGAGTACCGCACGCGCTCAGTAGAGGTGGTGCTGGAGGAGGCTAGCACTGTGGGAGAACATCAAGCAGATCTGGAGACAGAGCTTCAAGTGCCTGTGTCCTAAAATGCAGTTTAAAAAGGCTGGAAGAGTGGAGATGGTTTCTGAACAacggcaCTGAGGAGTTTACACCTGCCCAAAAACAACAGCCTGTACGTGCTGACCCCGACATCGCCCCCACTAGCTTCATTATCTCCTAGCAGCGTCCAGCAGGAGTCGTTAAATCAGAACTACCTGCTGATCATCAGCCACCGGGAAGCGCAGAGAGAGTACAGCCTCAATTTCCCCGCCACTAGAACCATCCAGGAGGTAAAAAGGAACATTTCAGACTTGACGAACATCCCAGTACGGCATCAGCAGTGGGATGGCTGGCCTGCCTCAGCATCTGATGACTCGatgacGCTGTCCTCCTCTGGGATCAGCTACCCGTGCCATCACCTGACTGTGTGCCGGAGATCCTCCCCAGCCGCCACGTTGGAGCCATCTGAAGAGTGCACTGATGTCCACATGGTCAGTGACAGTGAAGGGGATGACTTTGAGGATGCGTCTGAGTTCGGAGTAGATGAATCAGAAATCTTCGGTATGGGAAGCTCGAGTTGTCGGAAGTCTCCGATGATGCCGGAGAACAGCGAAAACGAGGGAGATGCCTTACTGCACTTTACTGGAGAGTTCTCATCACGATATGGAGATTGCCATCCAGTCTTCTTCATTGGTTCCCTGGAGGCAGCATCTCAAGAAGCCTTTTTTGGTAAAGCCAGAGATAGAAAGCTCCTGGCCATCTACCTCCACAACGACGACAGCGTTCTCAGCAACGTCTTCTGCTCCCAGATGATGTGCGCCGAGTCCATAGTCTCATATCTCAGCCAGAACTTCATCACATGGGCCTGGGACGTCACTAAAGAAGCTAACAAAGCCAGACTGCTCACTATGTGTACGAGGCACTTCGGAAGTGTTGTAGCACAGACCATTCGGACGTACAAAACCGACCAGTTCCCCCTGCTGCTGATCGTCATGGGGAAAAGAACATCGAATGAAGTTTTAAACGTCATTCCAGGTAACACGACAGTGGACGAGCTGATGATGAGACTCATGGGAGCCATGGAGATCTTCACATCTCAGCAGCAGGAGGACATAAGAGATGAGGACGAGCGCGAGGCCAGAGAAACGGTGAAGAGGGAGCAGGATGAAGCATATCGCTTATCTTTAGAAGCTGATCGTAAAAAGAGAGAAGCACAGGAACGAGAAGAGGCGGAGCAAGTACGCCAGGAGCGAATCAGGAAAGAGCAGGAAGAGGAAAGAGAGGCGATTCGTCTGTCGCTGGAGCAGACCCTGCCGCCGGAGCCGAAGGAGGAGGAAGGAGAGCCGGTCAGTAAGCTGAGGATCCGGACGCCCAGCGGAGAGTTTCTGGAGAGGCGTTTCCTGGGAAGCTGCAAGCTGCAGGTCCTCTTCGACTTCGTGGCGTCTAAAGGCTATCCATCAGACGAATTCAAACTCCTCACCACCTTCCCCCGCAGAAATATAACACAGTTAGACCCGGCGTGGACGCTGTTGGAAGCCAAGCTCTTCCCCCAGGAGACGCTCTTCCTGGAGGCTAAAGAGTAGAACTGACTCTCGACTGACTGCCCCTGGACAAATCACCCCGAGCAGCGACGACGAACTTTAGCATGGTGTCCGCAGAGAAGagacacgtacacacacacacaccccatacacacacacacacacatacacacacagtacatgaATACCGAGTGTATGTTGTTGTATGCACACTGAAGCTTTCACAagcacagagatacagagaaacacatacACCACAGTTGCAGTGTCACAGTTTTTCTCCGATCACTGGTAAATCGATGGGAAAAagttcaaaaaaagaaaagaaaaaaagagtaaaacagAAGTGTGGAGACCTAGACCGGCATCAGCGATGATGTTCCTCTACGGCTGCTTTTTAAAACCTGGTTTGTGTTGAAACGaaacaaaaagtaataataaaaataaaaaaacgaccaaaaaaaaaaaaagaacaaaaaaagacgGAAAACGAAAAACAGAGACATTTCCTGGAGAACGCTGGACTGTCTCCTTCCTCTCGCTCCATTGGATCCCTCACTGTTTGGCCACGCCCCTATGGAGTGCCAGCCGCCGTCCCCATTCACCCTTTTCTCCTCTATAATCCCTGATCAGACCTGGTTTTAATCTCAACTGCTCGGAAAAAAACGACAGGTCCCTCAGGttttctttcgttttttttttttttgtttgttttttctccttCCCTTTTGTCCCTTTAAGTTTGATGctgtattagttttagtttgatacattatataaaatatatatgaaccTC

Function

symbol description
faf1 Acts upstream of or within cartilage development; fin regeneration; and pharyngeal system development. Is expressed in pharyngeal arch; pharyngeal arch 1; pharyngeal arch 2; and pharyngeal arch 3-7. Orthologous to human FAF1 (Fas associated factor 1).

NR:

description
FAS-associated factor 1-like

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K20703 FAF1; FAS-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU66505 False 711 TUCP 0.59 4 2982924 3013630
TU66506 False 688 TUCP 0.58 5 2982924 3013630
TU66507 False 789 TUCP 0.59 4 2982846 3013630
XM_022671018.1 True 3077 mRNA 0.51 21 2982895 3152050

Neighbor

gene id symbol gene type direction distance location
rnf11 rnf11,rnf11b coding upstream 65415 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 106418 2828935 ~ 2876428 (+)
eps15 eps15 coding upstream 173422 2747844 ~ 2809424 (+)
LOC103024869 calr,LOC108265943,LOC102308154,LOC106512241,LOC105936842,LOC108425050,LOC103464072 coding upstream 238394 2736304 ~ 2744452 (+)
tor3a tor3a,LOC108266023,LOC107548256,LOC107699619,LOC107743897,LOC107657890 coding upstream 248306 2725485 ~ 2734540 (+)
dmrta2 dmrta2,LOC107578325 coding downstream 19959 3172009 ~ 3175759 (+)
agbl4 agbl4,LOC107603279 coding downstream 367558 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding downstream 868403 4020453 ~ 4041702 (+)
bcar3 bcar3 coding downstream 1241651 4393701 ~ 4519665 (+)
pdpn NA coding downstream 1737658 4889708 ~ 4909202 (+)
G49162 cdkn2c non-coding upstream 6817 2955254 ~ 2976029 (+)
G49164 NA non-coding upstream 113325 2867462 ~ 2869521 (+)
G49163 NA non-coding upstream 142063 2840312 ~ 2840783 (+)
LOC103026017 NA non-coding upstream 258618 2708704 ~ 2724228 (+)
G49154 NA non-coding upstream 273692 2707023 ~ 2709154 (+)
G49351 NA non-coding downstream 81624 3233674 ~ 3234451 (+)
G49354 NA non-coding downstream 83021 3235071 ~ 3235275 (+)
G49355 NA non-coding downstream 83982 3236032 ~ 3236433 (+)
G49365 NA non-coding downstream 99332 3251382 ~ 3254354 (+)
G49366 NA non-coding downstream 111095 3263145 ~ 3263661 (+)
G48714 NA other upstream 2171581 808155 ~ 811265 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1047889 4199939 ~ 4239873 (+)
G49475 NA other downstream 1092478 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 2467109 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 2625002 5777052 ~ 5789265 (+)
G50063 NA other downstream 3219470 6371520 ~ 6376705 (+)

Expression


Co-expression Network