G49185


Basic Information

Item Value
gene id G49185
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3096363 ~ 3100087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66516
ttataaagagttttaagatttcagaaatcaatatttggtggaataactctggtttttaatcacagttttcatgcatctccgcatgttctcctccaccagtcttacacactgcttttgaataactttatgctttacactcctggtgcagaaattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaa

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66516 True 238 lncRNA 0.35 2 3096363 3100087

Neighbor

gene id symbol gene type direction distance location
rnf11 rnf11,rnf11b coding upstream 178932 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 219935 2828935 ~ 2876428 (+)
eps15 eps15 coding upstream 286939 2747844 ~ 2809424 (+)
LOC103024869 calr,LOC108265943,LOC102308154,LOC106512241,LOC105936842,LOC108425050,LOC103464072 coding upstream 351911 2736304 ~ 2744452 (+)
tor3a tor3a,LOC108266023,LOC107548256,LOC107699619,LOC107743897,LOC107657890 coding upstream 361823 2725485 ~ 2734540 (+)
dmrta2 dmrta2,LOC107578325 coding downstream 71922 3172009 ~ 3175759 (+)
agbl4 agbl4,LOC107603279 coding downstream 419521 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding downstream 920366 4020453 ~ 4041702 (+)
bcar3 bcar3 coding downstream 1293614 4393701 ~ 4519665 (+)
pdpn NA coding downstream 1789621 4889708 ~ 4909202 (+)
G49162 cdkn2c non-coding upstream 120334 2955254 ~ 2976029 (+)
G49164 NA non-coding upstream 226842 2867462 ~ 2869521 (+)
G49163 NA non-coding upstream 255580 2840312 ~ 2840783 (+)
LOC103026017 NA non-coding upstream 372135 2708704 ~ 2724228 (+)
G49154 NA non-coding upstream 387209 2707023 ~ 2709154 (+)
G49351 NA non-coding downstream 133587 3233674 ~ 3234451 (+)
G49354 NA non-coding downstream 134984 3235071 ~ 3235275 (+)
G49355 NA non-coding downstream 135945 3236032 ~ 3236433 (+)
G49365 NA non-coding downstream 151295 3251382 ~ 3254354 (+)
G49366 NA non-coding downstream 163058 3263145 ~ 3263661 (+)
G48714 NA other upstream 2285098 808155 ~ 811265 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1099852 4199939 ~ 4239873 (+)
G49475 NA other downstream 1144441 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 2519072 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 2676965 5777052 ~ 5789265 (+)
G50063 NA other downstream 3271433 6371520 ~ 6376705 (+)

Expression


Co-expression Network