G49351


Basic Information

Item Value
gene id G49351
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3233674 ~ 3234451 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66735
gtccaccccacgcgggagggtgctgccttactttcatgcagcatagctcatagtcttttagctagtcggcagagtagtattagaagctgctgacaatccagagccgggaccaggccgcagacagagaggcttaaccgaccgtctgcgagctgcaaagagacgttacctagataccaatgtattcagactgtgtctgtcccccgagtcaaacaaaaacatcaaaaaactaaaacagtaaatctaaataacttaacttatattaaacaatcatatccagactgtagtactaacatttcaagcctaaagattggtttacttaatattagatctctaaattcaaaagcagttctagtgaatgaaatgataactgatcagaaattcgatattctgtgtctgacagaaacctggattaggccaaatgaatatgtagcattaaatgaagccacccctg
>TU66736
agagcaccggacattagtggcaacctCAGGCTGTtagggaataggagatattcgagggtagtaattcatgtaggggccaatgatattcgtctgcggcagtctgaagtaactaaggctaatattaaagaggtgattaaacaggcccagacgctgtccgaggaggtaatctgctctggccccatcccaatgaggcgtggtgatgaagcttacagcaggctttcttcgctgaaccgctggatgtccaagtggtgtgcagaaaatcatgtgggctttatagataactggctacactttgagggcaagcctggtcttttaggtagggatggtgtccaccccacgcgggagggtgctgccttactttcatgcagcatagctcatagtcttttagctagtcggcagagtagtattagaagctgctgacaatccagagccgggaccaggccgcagacagagaggcttaaccgaccgtctgcgagctgcaaagagacgttacctagataccaatgtattcagactgtgtctgtcccccgagtcaaacaaaaacatcaaaaaactaaaacagtaaatctaaataacttaacttatattaaacaatcatatccagactgtagtactaacatttcaagcctaaagattggtttacttaatattagatctctaaattcaaaagcagttctagtgaatgaaatgataactgatcagaaattcgatattctgtgtctgacagaaacctggattaggccaaatgaatatgtagcattaaatgaagccacccctg
>TU66737
tagggaataggagatattcgagggtagtaattcatgtaggggccaatgatattcgtctgcggcagtctgaagtaactaaggctaatattaaagaggtgattaaacaggcccagacgctgtccgaggaggtaatctgctctggccccatcccaatgaggcgtggtgatgaagcttacagcaggctttcttcgctgaaccgctggatgtccaagtggtgtgcagaaaatcatgtgggctttatagataactggctacactttgagggcaagcctggtcttttaggtagggatggtgtccaccccacgcgggagggtgctgccttactttcatgcagcatagctcatagtcttttagctagtcggcagagtagtattagaagctgctgacaatccagagccgggaccaggccgcagacagagaggcttaaccgaccgtctgcgagctgcaaagagacgttacctagataccaatgtattcagactgtgtctgtcccccgagtcaaacaaaaacatcaaaaaactaaaacagtaaatctaaataacttaacttatattaaacaatcatatccagactgtagtactaacatttcaagcctaaagattggtttacttaatattagatctctaaattcaaaagcagttctagtgaatgaaatgataactgatcagaaattcgatattctgtgtctgacagaaacctggattaggccaaatgaatatgtagcattaaatgaagccacccctg
>TU66738
tagggaataggagatattcgagggtagtaattcatgtaggggccaatgatattcgtctgcggcagtctgaagtaactaaggctaatattaaagaggtgattaaacaggcccagacgctgtccgaggaggtaatctgctctggccccatcccaatgaggcgtggtgatgaagcttacagcaggctttcttcgctgaaccgctggatgtccaagtggtgtgcagaaaatcatgtgggctttatagataactggctacactttgagggcaagcctggtcttttaggtagggatggtgtccaccccacgcgggagggtgctgccttactttcatgcagcatagctcatagtcttttagctagtcggcagagtagtattagaagctgctgacaatccagagccgggaccaggccgcagacagagaggcttaaccgaccgtctgcgagctgcaaagagacgttacctagataccaatgtattcagactgtgtctgtcccccgagtcaaacaaaaacatcaaaaaactaaaacagtaaatctaaataacttaacttatattaaacaatcatatccagactgtagtactaacatttcaagcctaaagattggtttacttaatattagatctctaaattcaaaagcagttctagtgaatgaaatgataactgatcagaaattcgatattctgtgtctgacagaaacctgg
>TU66739
gtccaccccacgcgggagggtgctgccttactttcatgcagcatagctcatagtcttttagctagtcggcagagtagtattagaagctgctgacaatccagagccgggaccaggccgcagacagagaggcttaaccgaccgtctgcgagctgcaaagagacgttacctagataccaatgtattcagactgtgtctgtcccccgagtcaaacaaaaacatcaaaaaactaaaacagtaaatctaaataacttaacttatattaaacaatcatatccagactgtagtactaacatttcaagcctaaagattggtttacttaatattagatctctaaattcaaaagcagttctagtgaatgaaatgataactgatcagaaattcgatattctgtgtctgacagaaacctgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66735 False 451 lncRNA 0.41 1 3234001 3234451
TU66736 True 778 lncRNA 0.44 1 3233674 3234451
TU66737 False 744 lncRNA 0.44 1 3233708 3234451
TU66738 False 701 lncRNA 0.44 1 3233708 3234408
TU66739 False 408 lncRNA 0.41 1 3234001 3234408

Neighbor

gene id symbol gene type direction distance location
dmrta2 dmrta2,LOC107578325 coding upstream 57915 3172009 ~ 3175759 (+)
rnf11 rnf11,rnf11b coding upstream 316243 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 357246 2828935 ~ 2876428 (+)
eps15 eps15 coding upstream 424250 2747844 ~ 2809424 (+)
LOC103024869 calr,LOC108265943,LOC102308154,LOC106512241,LOC105936842,LOC108425050,LOC103464072 coding upstream 489222 2736304 ~ 2744452 (+)
agbl4 agbl4,LOC107603279 coding downstream 285157 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding downstream 786002 4020453 ~ 4041702 (+)
bcar3 bcar3 coding downstream 1159250 4393701 ~ 4519665 (+)
pdpn NA coding downstream 1655257 4889708 ~ 4909202 (+)
LOC103034196 NA coding downstream 1696093 4930544 ~ 4943083 (+)
G49146 NA non-coding upstream 83086 2657196 ~ 3150588 (+)
G49185 NA non-coding upstream 133587 3096363 ~ 3100087 (+)
G49162 cdkn2c non-coding upstream 257645 2955254 ~ 2976029 (+)
G49164 NA non-coding upstream 364153 2867462 ~ 2869521 (+)
G49163 NA non-coding upstream 392891 2840312 ~ 2840783 (+)
G49354 NA non-coding downstream 620 3235071 ~ 3235275 (+)
G49355 NA non-coding downstream 1581 3236032 ~ 3236433 (+)
G49365 NA non-coding downstream 16931 3251382 ~ 3254354 (+)
G49366 NA non-coding downstream 28694 3263145 ~ 3263661 (+)
G49381 NA non-coding downstream 148809 3383260 ~ 3416861 (+)
faf1 faf1,LOC107743872 other upstream 81624 2982846 ~ 3152050 (+)
G48714 NA other upstream 2422409 808155 ~ 811265 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 965488 4199939 ~ 4239873 (+)
G49475 NA other downstream 1010077 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 2384708 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 2542601 5777052 ~ 5789265 (+)
G50063 NA other downstream 3137069 6371520 ~ 6376705 (+)

Expression


Co-expression Network