G49381


Basic Information

Item Value
gene id G49381
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3383260 ~ 3416861 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66773
acgcgtttttttgcccattgaaaatgaatgggcagAACTTTGCACGCCCGTGGACGTCGCAATTTTTGAAATACGAAGATGAAACCAATTGAGGacctgtagaacttattgagctCTTTCCGAAAATATGCGTTACGAAAAGTTACGACGTACGGATTTCGTACGATTGTCGTACGAAGTGGCCCCATTGGAATGAATGGGGCCAATCGGAGGACGGCAGCTAGATCGAAGGACAGGTAGCTAgaactccagtactgtgtgtaatggagcagCTATGGGATAAAACAGCattaggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccagagccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccagagccccagtactgtgtgtaatggagcaactggtcaaaagtttgggtaccccGGTCAGCtctgcaatcacactcgcagtttctgtaggaactgcaatctagttcT
>TU66774
acgcgtttttttgcccattgaaaatgaatgggcagAACTTTGCACGCCCGTGGACGTCGCAATTTTTGAAATACGAAGATGAAACCAATTGAGGacctgtagaacttattgagctCTTTCCGAAAATATGCGTTACGAAAAGTTACGACGTACGGATTTCGTACGATTGTCGTACGAAGTGGCCCCATTGGAATGAATGGGGCCAATCGGAGGACGGCAGCTAGATCGAAGGACAGGTAGCTAgaactccagtactgtgtgtaatggagcagCTATGGGATAAAACAGCattaggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccagagccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccagagccccagtactgtgtgtaatggagcaactggtcaaaagtttgggtaccccGGTCAGCtctgcaatcacactcgcagtttctgtaggaactgcaatctagttcT
>TU66775
acgcgtttttttgcccattgaaaatgaatgggcagAACTTTGCACGCCCGTGGACGTCGCAATTTTTGAAATACGAAGATGAAACCAATTGAGGacctgtagaacttattgagctCTTTCCGAAAATATGCGTTACGAAAAGTTACGACGTACGGATTTCGTACGATTGTCGTACGAAGTGGCCCCATTGGAATGAATGGGGCCAATCGGAGGACGGCAGCTAGATCGAAGGACAGGTAGCTAgaactccagtactgtgtgtaatggagcagCTATGGGATAAAACAGCattaggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccggcccccagtactgtgtgtaatggagccacaggtcaaaagtttggacaccccagagccccagtactgtgtgtaatggagccacgggtcaaaagtttggacaccccagagccccagtactgtgtgtaatggagcaactggtcaaaagtttgggtaccccGGTCAGCtctgcaatcacactcgcagtttctgtaggaactgcaatctagttattattatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66773 False 579 lncRNA 0.50 2 3383260 3383890
TU66774 False 526 lncRNA 0.49 2 3383260 3383890
TU66775 True 639 lncRNA 0.49 2 3383260 3416861

Neighbor

gene id symbol gene type direction distance location
dmrta2 dmrta2,LOC107578325 coding upstream 207501 3172009 ~ 3175759 (+)
rnf11 rnf11,rnf11b coding upstream 465829 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 506832 2828935 ~ 2876428 (+)
eps15 eps15 coding upstream 573836 2747844 ~ 2809424 (+)
LOC103024869 calr,LOC108265943,LOC102308154,LOC106512241,LOC105936842,LOC108425050,LOC103464072 coding upstream 638808 2736304 ~ 2744452 (+)
agbl4 agbl4,LOC107603279 coding downstream 102747 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding downstream 603592 4020453 ~ 4041702 (+)
bcar3 bcar3 coding downstream 976840 4393701 ~ 4519665 (+)
pdpn NA coding downstream 1472847 4889708 ~ 4909202 (+)
LOC103034196 NA coding downstream 1513683 4930544 ~ 4943083 (+)
G49366 NA non-coding upstream 119599 3263145 ~ 3263661 (+)
G49365 NA non-coding upstream 128906 3251382 ~ 3254354 (+)
G49355 NA non-coding upstream 146827 3236032 ~ 3236433 (+)
G49354 NA non-coding upstream 147985 3235071 ~ 3235275 (+)
G49351 NA non-coding upstream 148809 3233674 ~ 3234451 (+)
G49385 NA non-coding downstream 34916 3451777 ~ 3452462 (+)
G49401 NA non-coding downstream 149470 3566331 ~ 3593543 (+)
G49406 NA non-coding downstream 179641 3596502 ~ 3634177 (+)
G49397 NA non-coding downstream 549732 3966593 ~ 4052875 (+)
G49399 NA non-coding downstream 625917 4042778 ~ 4055761 (+)
faf1 faf1,LOC107743872 other upstream 231210 2982846 ~ 3152050 (+)
G48714 NA other upstream 2571995 808155 ~ 811265 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 783078 4199939 ~ 4239873 (+)
G49475 NA other downstream 827667 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 2202298 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 2360191 5777052 ~ 5789265 (+)
G50063 NA other downstream 2954659 6371520 ~ 6376705 (+)

Expression


Co-expression Network