G49406


Basic Information

Item Value
gene id G49406
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3596502 ~ 3634177 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66807
cttgaaaaaaaaaaaatcaaatcagtgttttttaatatcaaatcaaatttatttgtatagcgctttttacaactgatgttggcacaaagcagctttacagaaacatgattacaggacaaagaatcaggcaaaacattaaacatagaaaatacagaacccccagtgagcgcggaggcaaggaaaaactccctcagagctgcaggaggaggaagaaaccttgggaggaccaggactcacatttgaggggggaccatcctaccactggtcaaacggcttttaaattaaaatttaaaaagtcttttatacatccacataggttttatgtaTTCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66807 True 333 lncRNA 0.38 2 3596502 3634177

Neighbor

gene id symbol gene type direction distance location
dmrta2 dmrta2,LOC107578325 coding upstream 420743 3172009 ~ 3175759 (+)
rnf11 rnf11,rnf11b coding upstream 679071 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 720074 2828935 ~ 2876428 (+)
eps15 eps15 coding upstream 787078 2747844 ~ 2809424 (+)
LOC103024869 calr,LOC108265943,LOC102308154,LOC106512241,LOC105936842,LOC108425050,LOC103464072 coding upstream 852050 2736304 ~ 2744452 (+)
bend5 bend5,LOC106584333,LOC107707580 coding downstream 386276 4020453 ~ 4041702 (+)
bcar3 bcar3 coding downstream 759524 4393701 ~ 4519665 (+)
pdpn NA coding downstream 1255531 4889708 ~ 4909202 (+)
LOC103034196 NA coding downstream 1296367 4930544 ~ 4943083 (+)
LOC103035057 rimkla,LOC107556480,LOC107717536,LOC107669631,LOC107711947,LOC107591767 coding downstream 1320100 4954277 ~ 4993901 (+)
G49401 NA non-coding upstream 2959 3566331 ~ 3593543 (+)
G49385 NA non-coding upstream 144040 3451777 ~ 3452462 (+)
G49381 NA non-coding upstream 179641 3383260 ~ 3416861 (+)
G49366 NA non-coding upstream 332841 3263145 ~ 3263661 (+)
G49365 NA non-coding upstream 342148 3251382 ~ 3254354 (+)
G49397 NA non-coding downstream 332416 3966593 ~ 4052875 (+)
G49399 NA non-coding downstream 408601 4042778 ~ 4055761 (+)
G49460 NA non-coding downstream 479535 4113712 ~ 4218334 (+)
G49571 mrpl55 non-coding downstream 660653 4294830 ~ 4297567 (+)
LOC111192750 NA non-coding downstream 696018 4330195 ~ 4365579 (+)
faf1 faf1,LOC107743872 other upstream 444452 2982846 ~ 3152050 (+)
G48714 NA other upstream 2785237 808155 ~ 811265 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 565762 4199939 ~ 4239873 (+)
G49475 NA other downstream 610351 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 1984982 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 2142875 5777052 ~ 5789265 (+)
G50063 NA other downstream 2737343 6371520 ~ 6376705 (+)

Expression


Co-expression Network