spata6 (dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155)


Basic Information

Item Value
gene id spata6
gene name dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 4199939 ~ 4239873 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU66877
ttTATCGTGTTTATCATGCCttaagtcaatttcacaccggagttctcctttaacagaACTAAATGTatagaatataatttaacaaatTTTGGTTCAGACTTTAAACATGTGAAAAACCCCTTAAAcccaatttttttaaagctgttcgCATCTTCCTACATAACACATACCAATTCTGCTACTTTagctacagtaataataatcagaCTTTAATAGATACAGAAACAAAGGACTGGGACCGTGGTTTTATGTGTTATTTAATAGAGATCCAATGATTTTGATCAATGTATGTGAGCTTTTGCAAAATATGAAATCTGGCATCATGCTCCATCATCCTCCcagactggaaaaaaaaaacaacatgacgATACTAAAATGAAATTGTAATATCCATAGCTTTTTGTTTCCcttattattttacaatttaattacttttaaaacgGCAAAGTGTTAGGTCAAAGTTAAAATATAGttgaaaaaatgtaatacacTTAAAAAAGCTGCAAAATTCGATCTGTTATTTACATAAACATATCAGAACAACACTACAGCGTAAATGCAATTCttacattatttctttttagtaaatttatgcttctttttatgcatcttgccGGCTGCCTCTGCTGCTCTCTCTGACATGATTTCCTGGTATTTCCTCTTGTTAAAGCTGGAAAAAGAGGGATTGAGAAAGAAAGGAGACGTTACACCACATGTTAACTGGCAGCTAAACACAGTTATGTAAAATTTATTAGTGAATAGTAGATAAATTAACACATTTAGTGAACAAATGAaaatcatcactgtccaatgaaaaacacgtatctccataatttgaacaaaccaatagaatttctccaaaattacctgaaaaatATTACATCGATTTTATCCCTCCCCAGTAAAAGTTGATGTTTTGccgatatgtttttttttttaattggacagcgacaatatacgCTAAAGAAcacacatttctggacaagctgagagatacaaaacattcacttaaaaaaaaataaataaagtgtaagAAGCATAGGGACTTCACAATTAGAGTAAAATATTATAAGATTTTACAGACAGTTAGCAGTGGACAATACACTATTGTCCCTGTTTAAATAAGTGAAGCTTTTATTATGGGGTACAAATACTATACACCGTTGCTTTAAAAGAAAAGCCATTGAGAGGGTTGAAGAGTCTGGATTcgaacaatacttttttttttatcttaatttataTGTTTACTGGACATGAACTGTAATGTATTAAACAACctcatttgtattttattaattgctTTTTCACATCCATTTTTGTACTATTATTTGTGTTACATTTTCAAACATCTTAcaaattgtaacatttttttttatatattgcgCTATCTGTGTCTTACACTTAAGTTGCCATTGACTGCTCTGTATTGTG
>TU66878
ttTATCGTGTTTATCATGCCttaagtcaatttcacaccggagttctcctttaacagaACTAAATGTatagaatataatttaacaaatTTTGGTTCAGACTTTAAACATGTGAAAAACCCCTTAAAcccaatttttttaaagctgttcgCATCTTCCTACATAACACATACCAATTCTGCTACTTTagctacagtaataataatcagaCTTTAATAGATACAGAAACAAAGGACTGGGACCGTGGTTTTATGTGTTATTTAATAGAGATCCAATGATTTTGATCAATGTATGTGAGCTTTTGCAAAATATGAAATCTGGCATCATGCTCCATCATCCTCCcagactggaaaaaaaaaacaacatgacgATACTAAAATGAAATTGTAATATCCATAGCTTTTTGTTTCCcttattattttacaatttaattacttttaaaacgGCAAAGTGTTAGGTCAAAGTTAAAATATAGttgaaaaaatgtaatacacTTAAAAAAGCTGCAAAATTCGATCTGTTATTTACATAAACATATCAGAACAACACTACAGCGTAAATGCAATTCttacattatttctttttagtaaatttatgcttctttttatgcatcttgccGGCTGCCTCTGCTGCTCTCTCTGACATGATTTCCTGGTATTTCCTCTTGTTAAAGCTTCTGAACTCTGCATCAGCAAGCAATTCCTCTACGATggtcctcttcctctctttttggGGGATTCGGGAATGATAGAAGTCTGCTGGGTTATCCACTACAGTGCCAACCTGGAAGTATTTGGGGAATCCTTCTCTGTCGTTCTTCTTGTAAAAGCGCTTTGGATCCATAACTGAACGCATCTTCAGAGCTTTCAGGTCGTTCTTCAGTTCCTCCGTTAATTCAGGAGCTTTCATGTTGAACCAGCCGTCTCCTGTAGTTTTATCCTTTTCCTcCTTGCGCTTCAGTTTAGCAGCATGTTTGGATTCTTTGTACGGAGGCACGGCTGATTTCTTCTCAAAGTCAGGACCAATCACACTCTTCTTCAGcagCTCATCCTGAATCTTCTGCTCCTTGAGTTTTTTCAGGTTGTTGGAGACAGACTTTGATTTGCTGCCATCAAAACTGATATACAATCCGCCGAGATCCTTTACCTTCAGACCCGGATCAATCGCACTGGATAACGCcgtcAGTGCGGGTCTCCGAGTGGTGAAGAGCACATTGGAGTCTTCATCGTCGTCATCATCATCTCCCTCCTCATCAACAAAGTCATCTTCATCTTCAGCAGCTTTAGATTCTTTAACCTGCTCGTCCTCTTCATCACGGGCGCTATCGATATAATATTTCTCAGTGGGCAGAAACCCGGGCGAGCATCAATAACAAACagcccattattattattaatattattattattagctgaATCTGACTCTCTTGATGGTCCTGGTTGGCTCTCATCCACACACATGGCttcatcatcctcctcttcatcaTTATTATGATCTTTCCCAGTGTCGTCTTTAATACCTTCATCTGAGAgtccatcatcatcttcatcactgttctcttcctcatcatcatcactgcTGTCGAGCAAACTCACCACTCCTTTTTTGGGTTTGGTCTGCTCAGTGCTCATCATCTTCTGCACCAAGCTTTGAGAGCTTGATGATGGTTCTGGTTCCTCTTTGTTCTCAGCCTCGTCTTCATcatctttttcttcatctttcTCAACCTCCTTATCTGCTGAGGTATCGTAGGTCACTGATATACTCGTTTTAGGTACATCTACAACTTCTGATACTTCAGAAGCTTCTTTATCTTCTTCACTAATGATTGTTACGCCCTTCTCAACCTGCTCTGATTGACCAGATTCTTCTATCTTGTCTAATATCCTGCAATTGTCTTctttttcctcctcttctttctcATCCTCCGCTTCCACCACAAAGCTTTTTTCTTCCGATTCTTCAACCACTTTGACACTCTTTTCTGAAGATTTGGAGGATTCTACTGGATCTACCAGGTTTCGTTGAGGCTCTTCCGTCACAGTCACCCCCTTTTCAGGCTTCGCTTCTTCTGTCTCATCGATGCTTTGAACCTCTTGCACagatttttccatatttttaatGTCTACATCCATCTTTGACATCTCAGATTCTTCCTGAGTACCATCATTCTTCTCTACAATCTCAAGATCTTCAGCATCAGCTTCAGATACGGTTACGCCTCGAACTGGGCGGCTCTTAGCATCCGTCAATTCCTCATCATCGTCAAGAGTCAGAGTAAGATCGCCGGTAACGCCGTCTGAAATGGAACGATCCAGTCCATCTGCTCTAATGACTGTCCTATTGGTCTCCTCTACCTCGTCTTCCtgatcttcctcctcctcctcctcctccatcgcCTCAACGCCCTGTTCCTCCTCTTCCTTATCTTGGAGGCTTGTCGTATCCATTGGGGTCTCTTTGGAGATGTCCTTACTGATCTCCATGCTTTCCTCTTGCATTTTTTCTTCCTTGGAGGCTTTGGAAGTCGTATTAGACACATCGTGAACGACTCGGACGCTGCTCCTAGTCCTGGAAGCAGGTGCAGCACGGTTACTGCTGGCTGAACcagttctgctgctgcagggaGTGAGGCGGACCCGAAGAGAACGAGGACTATCGAGTAAAGCGCTGGTGGTTGATAGCGATTCTGAATCAGAATCAAGTACAAAAATGCCAACTTTTCCTCTGGGACTTAGACTAGGACCAGACTGGCATCCATCAGATTCGTAGGCCAGCTCATTGGATTTGTCTCCTCTTCGTCCTCTTGTCTTAGTTCTTGTTGATCGATTGGGTCCAGATGCAGCAGATGAAGCATCATTAGGTTCACTCTCCTCCAAATGTATTGGGATCGCCTCAGTGGGCTTCGTTCGACGGCTACGCGTCGTCCTGCGGACGGTGGACCCTTGAGGACTTCCAACTGCAGAAGAAGAACACGAATCGGCCTCGGAAGGATCAGCATCTTCAGCAGCACCTCTGGTCTTCCTCCGGCTCCTGGTGGTCATCCGAGCTTCCCGAACTTTAGACAAAGATGCGACAGAGCTGCAGGACTCTGCATCGGAATGATCACTGTCCTTTGAGGCGGCGGACACGGCTGATTCTCCTGGAACTGCAGATTTCTTCTGGCTCCTGACGGATCTCCGCGGCTTGCTGGAAATCGCCGAAGTACAAGACTCACCTTCAGACGCTTCCGGTTCTGTAGTCGTAACTGTAGTTCTCGCttttcctgctgctgctgccgctttTCTTCTGCCCCTGGTGGTCGACTGCACCAGAACATCTGAAGCCACCGAACAGCAGGATTCGGAATCTGAAACATCTGCTTCGTGGGTGGAGTCCGGTTggtttgctgctgctggttgacgcttgGATCTTCTCGTATCTCTTTTAGTTGCGGTCGATGGCGCTGGTTTAGCGGGAGTGGGGTTTTGTACCTCTGAATCATCCTGCTGGGAGTCACTGGTGTGTTCGCTCTGGGTCTGGTTCGTTACGATCACTGTCCTGCTTCTGGTTCTTCTGGTCGTAGGCGTGG
>XM_022671029.1
GTGTATCCCGGGTAACGgagagttagttagttagagatGGGGAGAGTAACAGTGAGAGGCCGAAACACAGCGCTACAGGTTACTGTACAGCTAAAACTACACGCTGTCACCTGTCCAGGGGTCCTGTTACCGTCCCATGAAGACGTTTACCTGAGTGTGCGAATGATGGGACGGTACCACAAAACTAAGTGTGTACCCTCCGTGTTTCCTCTTCTGTTGCATGAAAAGATGGTGTTCACTAAGATCTTCTCCGGAGCAGTAGACCCGGGTGATATAGCTGATCATCTGGAGAATGATACAACCTGTTTCGAGCTCATCCAGCTCGTCCCCCCAGAAGGTGAAATTCTGGCCACTCTTCAGGAGAACACCAGAGACTTCCTCTACCCGGGCCCCCGGCTGACTCCCCCAGCCCCCGGCTCGGAGAGAGAGATTCTGATGAAGAAATCTGTCTCCTTCCCGGGGATCTCGCCCAGAGTGGAGTTTTCTACCACGTCTGTTATTGAGGAGTGTGATTTGAAAGCTAGCCAGTCAACCTTCTCACCATCTAACTCGTCTCCTACTAAACCCTGCTGTGTGAAAACAAGCCCTGCAGGAAAGAGTAGGATGAAGCCGAGCACAGCGCCCCTGTGTGGATACCAGCAGCCCACAGTAGCATCGCAGAGCCGCTCCCCGTCTCCCTACACCCACCGCAGGATGTGCCAACTGTCTGAGGACACGCGACAGCGCCTCAGTCACCTTCAGCTCGGCCCCTACAACTTCAAGAAGGAGACGGCCCCGCAGCCTCCTTTTGTTGTCCCCTGTAGTCCAGACTCCTCGCTGACTGAATCCTCCACATCCCCTCCAGCTCTTCAGCCTTCACCTAAAGGAAGCTCTTTACGTCACAGATCTGTCAGTTTCGCTGCAGACCTCACAGatccTGAACTGTATGGAAGCTTCAGGGCAAAGCCTTCTAAAGCTAGACATCATTCTTTGGATATGCCACGTTTATCTCCTTGGGCTTCATCCAGAACTCCTCCTCACAGGAAACCCCCCGcattagtgcaaaaaaatatATTTCACAGCCCAGTCAGTCCCTCTCCCTCAGAGCAGATCCACAGCAGAGTTCAGAGGATTTTGAGCGCTCAGGCGTCTCGCAGGCTCTCGTTTGAggaacagagtgaagaaggaaaATCCAGTCAGTGCACACCTCTTCCTTCCTGCCCCGACTCTCCGTGTAACAGCCAAACACAACCGGACAGGGTTATTCCTGGAGAGCCATCTGTTCATTTAGATAGCGGAACCTTCTGGACCAACAAAGCAGCCGAATACACGGGGAGATCCCACAGAGCCGTGTTTGAGGACAGCCTGGGCAGAATTTACAGGAACATGTACAAAAACGCTTCAAGTCCTCGTCACAGCGATTCCCACAGCATCTGGACGTCATGACTGATCTGAGCAGGTTGTGCAGTTCACACGTGccaattatacaatatattatataatgtatttttaagtgtaATATCTGAGATCTTTTTCATACTTTGGAAGTTCAGAGAAGAGTCTAAgGTAAGGTTAATGTTTGTTAGATTATGTTCTGTATGTTTAGTAAGGTAAGTTGACTTTCCAAGCTTCCCTGTTAAATCTGACTCCTTTAGAGTGCAGGATCATCCTGCAGCAGTATGTGTGTAACAGATTTTTGTATTAGTGTTTATAAATtaggattaatctacagttacagtagatacagaatcaccagcccCGTAATCTTTTGTACCCGTACTGATGAGACGCACCTGTACATAAAAGTAAGtccgatttttttttagcacaataggattctattttttttgttgtattgtgaCGATAGCCTGCCTTAACGTCCTGTAATtggtaaaaaagtgtaaaaaaaaaaaaaagaccagggTTAAGTTGATCCAGACAGAGACTACCTCTGTAGTTTGGACCCAACTtagtcagtaagtcagttaCTTTTAAAACTGCAAAGTGTTAGGTATAAAATAAagtcaaaaaatacaatatacaaattTGGATCTGttatttacaaaaacatatcagaacaaaaagaaaaaaaatctcgtTTTATCTGGACTTTCTAGTGTTACCTGTTAATGCGCATGCGTGTCCCACGGGGGGGTCGTTCTGAGGGAGAGCGATGTAATGGTGGTTGTGTGAATACGGAGAAGTAAAGTTTGGAGTTCGTTTAAAACGCATGTCGTCTTTGTTCACTAACATCTAGTTGGTCCCCAGAAGGAAAAAAGATCTAGTGTTGTGCCTTTGTGTGCAGATGCAGCAGTATGAGTACAACAGATTATGGTGCTGGTGATTACTGTAGCTACTGTATATTAACTGACttaacaaaccaatcagtgtgaagtataTAAAGACCCTGCCCCCTTGTAGTGCACCCAGTCACTAAACTTCAGTGTGAAACTGGAcaacattaaaggagaactcctgtgTAAAATTGGCTTAGGGTGAAGTAAAACATGGGAAAGTGTACTATTCTTTGTTGAGTAGCTCACCTCCACTCTcgtgcagctttctgagatccagtatctTTATTCCGTTTGTCCAAACAACCTTTAGACTGAGTGATACGGGGCAGATTTATCTGCAGGTGCaagaatatgccccatatcacccagtctaaagggtgtttgtCCACATGgaataaaattactggatcttggaaagctgtgggagagcagaggtgtgctactcaacaaaggttagtacttttTATCGTGTTTATCATGCCttaagtcaatttcacaccggagttctcctttaacagaACTAAATGTatagaatataatttaacaaatTTTGGTTCAGACTTTAAACATGTGAAAAACCCCTTAAAcccaatttttttaaagctgttcgCATCTTCCTACATAACACATACCAATTCTGCTACTTTagctacagtaataataatcagaCTTTAATAGATACAGAAACAAAGGACTGGGACCGTGGTTTTATGTGTTATTTAATAGAGATCCAATGATTTTGATCAATGTATGTGAGCTTTTGCAAAATATGAAATCTGGCATCATGCTCCATCATCCTCCcagactggaaaaaaaaaacaacatgacgATACTAAAATGAAATTGTAATATCCATAGCTTTTTGTTTCCcttattattttacaatttaattacttttaaaacgGCAAAGTGTTAGGTCAAAGTTAAAATATAGttgaaaaaatgtaatacacTTAAAAAAGCTGCAAAATTCGATCTGTTATTTACATAAACATATCAGAACAACACTACAGCGTAAATGCAATTCttacattatttctttttagtaaatttatgcttctttttatgcatcttgccGGCTGCCTCTGCTGCTCTCTCTGACATGATTTCCTGGTATTTCCTCTTGTTAAAGCTGGAAAAAGAGGGATTGAGAAAGAAAGGAGACGTTACACCACATGTTAACTGGCAGCTAAACACAGTTATGTAAAATTTATTAGTGAATAGTAGATAAATTAACACATTTAGTGAACAAATGAaaatcatcactgtccaatgaaaaacacgtatctccataatttgaacaaaccaatagaatttctccaaaattacctgaaaaatATTACATCGACTTCCAATGAAAGTTACATCGATTTTATCCCTCCCCAGTAAAAGTTGATGTTTTGccgatatgtttttttttttaattggacagcgacaatatacgCTAAAGAAcacacatttctggacaagctgagagatacaaaacattcacttaaaaaaaaataaataaagtgtaagAAGCATAGGGACTTCACAATTAGAGTAAAATATTATAAGATTTTACAGACAGTTAGCAGTGGACAATACACTATTGTCCCTGTTTAAATAAGTGAAGCTTTTATTATGGGGTACAAATACTATACACCGTTGCTTTAAAAGAAAAGCCATTGAGAGGGTTGAAGAGTCTGGATTcgaacaatacttttttttttatcttaatttataTGTTTACTGGACATGAACTGTAATGTATTAAACAACctcatttgtattttattaattgctTTTTCACATCCATTTTTGTACTATTATTTGTGTTACATTTTCAAACATCTTAcaaattgtaacatttttttttatatattgcgCTATCTGTGTCTTACACTTAAGTTGCCATTGACTGCTCTGTATTGTGccttattaaaaaatgaaatgtaaa

Function

symbol description
dnttip2 Predicted to be involved in RNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human DNTTIP2 (deoxynucleotidyltransferase terminal interacting protein 2).

NR:

description
spermatogenesis-associated protein 6

GO: NA

KEGG:

id description
K23224 SPATA6; spermatogenesis-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU66877 False 1431 lncRNA 0.31 2 4229511 4230963
TU66878 False 3568 lncRNA 0.45 6 4229511 4239873
XM_022671029.1 True 4215 mRNA 0.40 14 4199939 4230987

Neighbor

gene id symbol gene type direction distance location
agbl4 agbl4,LOC107603279 coding upstream 5225 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding upstream 158237 4020453 ~ 4041702 (+)
dmrta2 dmrta2,LOC107578325 coding upstream 1024180 3172009 ~ 3175759 (+)
rnf11 rnf11,rnf11b coding upstream 1282508 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 1323511 2828935 ~ 2876428 (+)
bcar3 bcar3 coding downstream 153828 4393701 ~ 4519665 (+)
pdpn NA coding downstream 649835 4889708 ~ 4909202 (+)
LOC103034196 NA coding downstream 690671 4930544 ~ 4943083 (+)
LOC103035057 rimkla,LOC107556480,LOC107717536,LOC107669631,LOC107711947,LOC107591767 coding downstream 714404 4954277 ~ 4993901 (+)
nfya nfya,nfyal,LOC108265435,LOC107731273,LOC107668092 coding downstream 961157 5201030 ~ 5210826 (+)
G49399 NA non-coding upstream 144178 4042778 ~ 4055761 (+)
G49397 NA non-coding upstream 147064 3966593 ~ 4052875 (+)
G49406 NA non-coding upstream 565762 3596502 ~ 3634177 (+)
G49401 NA non-coding upstream 606396 3566331 ~ 3593543 (+)
G49385 NA non-coding upstream 747477 3451777 ~ 3452462 (+)
G49571 mrpl55 non-coding downstream 54957 4294830 ~ 4297567 (+)
LOC111192750 NA non-coding downstream 90322 4330195 ~ 4365579 (+)
G49586 NA non-coding downstream 164156 4404029 ~ 4453720 (+)
G49589 NA non-coding downstream 231646 4471519 ~ 4525653 (+)
G49587 fnbp1l,LOC107757999,LOC107599010 non-coding downstream 286285 4526158 ~ 4632053 (+)
faf1 faf1,LOC107743872 other upstream 1047889 2982846 ~ 3152050 (+)
G48714 NA other upstream 3388674 808155 ~ 811265 (+)
G49475 NA other downstream 4655 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 1379286 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 1537179 5777052 ~ 5789265 (+)
G50063 NA other downstream 2131647 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 2623483 6863356 ~ 6941978 (+)

Expression


Co-expression Network