G49571 (mrpl55)


Basic Information

Item Value
gene id G49571
gene name mrpl55
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 4294830 ~ 4297567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67028
CAGATTTCAAAAACTTTTATTAACATGATGATAAACAAAAATGACAGCCATGTAAAAGCTCTGTACATGTGAAACAGTATAAATACTTTCAGTCCAATCACGTTTTCTTCCAGAACTTGCTGTAGTCATCTACTTTAAATTCATCTTCAAATACTTCCTGTTCCACTTTCTTCGTCTTTTTAGGACCCCTCTTCTTCATCCGggccttcctctcctcctctgagAGAGTGCTGATATCTACCGGCATCATCACTATTCGTTTAGGCTCCTTGTATTTGATGTTAATGGTGGACCCGTCCGGACGCACCAGCAGAACCGGATACATCCGCTCATATTTCTGCCGTCCACAGCGAGCTACAGAGGTTCTGTTGGAGTtggactgagtgtgtgtgatgtggaaCGAGGAAGCAGCaactaaacacctctgggagaCGACTTCCTGAAGACACCTGAATAACCCGCCGCTATTCGCCCAGATCCTCTGCAGAGCCATATTAATAATCCCAGCCCGAGTtctgtataattattattattagtgtataAACTCTAATTTAACAGAAGCTGCAGTAACCGGAGGGAGAAGGTCACCAATACAGCACACAGCCTCAGAGCCGCTGTATAATCAGTCCCGTGCAGAAA

Function

symbol description
mrpl55 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Located in mitochondrion. Part of mitochondrial large ribosomal subunit.

NR:

description
39S ribosomal protein L55, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67028 True 639 lncRNA 0.44 3 4294830 4297567

Neighbor

gene id symbol gene type direction distance location
agbl4 agbl4,LOC107603279 coding upstream 100116 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding upstream 253128 4020453 ~ 4041702 (+)
dmrta2 dmrta2,LOC107578325 coding upstream 1119071 3172009 ~ 3175759 (+)
rnf11 rnf11,rnf11b coding upstream 1377399 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 1418402 2828935 ~ 2876428 (+)
bcar3 bcar3 coding downstream 96134 4393701 ~ 4519665 (+)
pdpn NA coding downstream 592141 4889708 ~ 4909202 (+)
LOC103034196 NA coding downstream 632977 4930544 ~ 4943083 (+)
LOC103035057 rimkla,LOC107556480,LOC107717536,LOC107669631,LOC107711947,LOC107591767 coding downstream 656710 4954277 ~ 4993901 (+)
nfya nfya,nfyal,LOC108265435,LOC107731273,LOC107668092 coding downstream 903463 5201030 ~ 5210826 (+)
G49460 NA non-coding upstream 76496 4113712 ~ 4218334 (+)
G49399 NA non-coding upstream 239069 4042778 ~ 4055761 (+)
G49397 NA non-coding upstream 241955 3966593 ~ 4052875 (+)
G49406 NA non-coding upstream 660653 3596502 ~ 3634177 (+)
G49401 NA non-coding upstream 701287 3566331 ~ 3593543 (+)
LOC111192750 NA non-coding downstream 32628 4330195 ~ 4365579 (+)
G49586 NA non-coding downstream 106462 4404029 ~ 4453720 (+)
G49589 NA non-coding downstream 173952 4471519 ~ 4525653 (+)
G49587 fnbp1l,LOC107757999,LOC107599010 non-coding downstream 228591 4526158 ~ 4632053 (+)
G49606 NA non-coding downstream 340970 4638537 ~ 4641062 (+)
G49475 NA other upstream 48603 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 54957 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 1142780 2982846 ~ 3152050 (+)
G48714 NA other upstream 3483565 808155 ~ 811265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 1321592 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 1479485 5777052 ~ 5789265 (+)
G50063 NA other downstream 2073953 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 2565789 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 2686623 6984190 ~ 6984261 (+)

Expression


Co-expression Network