G49646


Basic Information

Item Value
gene id G49646
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 4789225 ~ 4790020 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67111
CGAGCAGTTGTGATGGGATTAAAACAGTCAGTTTGGATTCAATAATAAAGAGGCGTGTCCCTATACTTTGGTTTATATAGTGTATACGTCTTAATGTACAGATGTTCTGTGTGTCTGAGTGCCTCACCATAGCCAGCTCAGCCTCCAGCTCTTTGATGCGGTTCTCCTTCAGGTCCTGTGCAGAGCGCAGTGCGGTGGCCAGTTCTGTGGCTTCTTTAGTTTGACGCCGCAGATCccacttctctctctccagcagaTCCTTCTCTTTAGCCAGTACTTTTACTGCATCCTCACTCTCCTGCcccgcaacacacacacacacaacacacacacacacacacacacacacacacacacacacatgcagagagagacacacacgcgtacatgcagagagagacacacacacacacacgcagagagagacacacacgcagagagagagacaaacacacgcagagagagagagacacacacgcaGAGAGACAcgcaaagagagagacacacacagagagagacacacacagacacacacaaagagaga
>TU67112
CGAGCAGTTGTGATGGGATTAAAACAGTCAGTTTGGATTCAATAATAAAGAGGCGTGTCCCTATACTTTGGTTTATATAGTGTATACGTCTTAATGTACAGATGTTCTGTGTGTCTGAGTGCCTCACCATAGCCAGCTCAGCCTCCAGCTCTTTGATGCGGTTCTCCTTCAGGTCCTGTGCAGAGCGCAGTGCGGTGGCCAGTTCTGTGGCTTCTTTAGTTTGACGCCGCAGATCccacttctctctctccagcagaTCCTTCTCTTTAGCCAGTACTTTTACTGCATCCTCACTCTCCTGCcccgcaacacacacacacaacacacacacacacacacacatgcagagagagacacacacgcgtacatgcagagagagagacacacacgcACacacgcagagagagagacacacacacacacacgcagagagagacacacacgcagagagagagacaaacacacgcagagagagagagacacacacgcagagacacacacacgcagagagagagacacacacgcaGAGAGACAcgcaaagagagagacacacacagagagagacacacacagacacacacaaagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67111 False 544 lncRNA 0.50 3 4789225 4790020
TU67112 True 590 lncRNA 0.50 3 4789225 4790020

Neighbor

gene id symbol gene type direction distance location
bcar3 bcar3 coding upstream 269560 4393701 ~ 4519665 (+)
agbl4 agbl4,LOC107603279 coding upstream 594511 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding upstream 747523 4020453 ~ 4041702 (+)
dmrta2 dmrta2,LOC107578325 coding upstream 1613466 3172009 ~ 3175759 (+)
rnf11 rnf11,rnf11b coding upstream 1871794 2881685 ~ 2917431 (+)
pdpn NA coding downstream 99688 4889708 ~ 4909202 (+)
LOC103034196 NA coding downstream 140524 4930544 ~ 4943083 (+)
LOC103035057 rimkla,LOC107556480,LOC107717536,LOC107669631,LOC107711947,LOC107591767 coding downstream 164257 4954277 ~ 4993901 (+)
nfya nfya,nfyal,LOC108265435,LOC107731273,LOC107668092 coding downstream 411010 5201030 ~ 5210826 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032,LOC107731197 coding downstream 423384 5213404 ~ 5258615 (+)
G49613 NA non-coding upstream 33537 4725356 ~ 4755688 (+)
G49615 abl2 non-coding upstream 131164 4654754 ~ 4658061 (+)
G49606 NA non-coding upstream 148163 4638537 ~ 4641062 (+)
G49587 fnbp1l,LOC107757999,LOC107599010 non-coding upstream 157172 4526158 ~ 4632053 (+)
G49589 NA non-coding upstream 263572 4471519 ~ 4525653 (+)
G49649 NA non-coding downstream 32377 4822397 ~ 4847422 (+)
G49666 NA non-coding downstream 99295 4889315 ~ 4947765 (+)
LOC107197045 NA non-coding downstream 207806 4997826 ~ 5002094 (+)
G49673 NA non-coding downstream 212589 5002609 ~ 5003622 (+)
G49682 NA non-coding downstream 232052 5022072 ~ 5026202 (+)
G49475 NA other upstream 542998 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 549352 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 1637175 2982846 ~ 3152050 (+)
G48714 NA other upstream 3977960 808155 ~ 811265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 829139 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 987032 5777052 ~ 5789265 (+)
G50063 NA other downstream 1581500 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 2073336 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 2194170 6984190 ~ 6984261 (+)

Expression


Co-expression Network