G49682


Basic Information

Item Value
gene id G49682
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5022072 ~ 5026202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67150
atttcttcatagtttggagtttagtattaatttacaatacagAACCTTTCAAaataacttaattaaaaaacaccttaaaaacactgtatttaaggTGAATCTAAAATTTTGACAGGCACtatacaagcacacacacaaaaataagtGTGAAAGCAGTGCGTTCACGTGACTCACCCATATTGGCCTCGGCAAGCAGCAGGTAAGCTGGCACCAGCTCCACAGCATCGTGCCCATAAAGGTCGATGGCACAGTGCAGAGAGAGCTGAGCTGCAGGTAAGGATTCAGTATACCTTCCCTCCACAACCTGCACCCGAGCCTCCGCCCGGGAAACCTCCATCAGCTGCTCCTATCAGTCTCTTTTGTGCCAGCGTCTGCTGGTGGTCTCGGTCGGCCTTTAGAGGGAGGTAGGGAACAGGTGCTCGTATGTGGATGAGAAGCTCACAGGCTTTCTTATGGATGCTGTTCCAATCTGCCTGCTGGTGAGCCGcatcacAGTAGAAGGTGACGCGGCAGTGTGAACACCGGAGGTGAGCTGGTTTCTGACACAGCTCACACAGTCTCTTCACTCCTTTAGGACTGGCCAGTGGATTTATAGATTCGGACATCTTACTCTTCTCCATCtcacttaatatttaataaaaatagatttttaacctgcagaaatctgaaaatctgttTAGATCTGGCTGACGAATTAATCCacagaaaacaggaaaacagcagaagttaggttagctaacaggTAAAGGATACAGCCACAGCTTTAGTAAGAAATAAAAGCTGTCTGTAAACGCTTAAGGAATATgttacctagctaactaatgaTGTATTAGTTATTATATTAGTTACAGATATGATCTGCTGttagtagtttttaaataaagagataataATCGAACTAAACTTAACAAAAGCTGCAGCTTTCTGCTGGGTTTGTTTCCGCTACAGACTCCAGGTTTCCACGGGCGACCAACAGCCTGTTGTAAC

Function

NR:

description
PREDICTED: UHRF1-binding protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67150 True 987 lncRNA 0.43 3 5022072 5026202

Neighbor

gene id symbol gene type direction distance location
LOC103035057 rimkla,LOC107556480,LOC107717536,LOC107669631,LOC107711947,LOC107591767 coding upstream 28171 4954277 ~ 4993901 (+)
LOC103034196 NA coding upstream 78989 4930544 ~ 4943083 (+)
pdpn NA coding upstream 112870 4889708 ~ 4909202 (+)
bcar3 bcar3 coding upstream 502407 4393701 ~ 4519665 (+)
bend5 bend5,LOC106584333,LOC107707580 coding upstream 980370 4020453 ~ 4041702 (+)
nfya nfya,nfyal,LOC108265435,LOC107731273,LOC107668092 coding downstream 174828 5201030 ~ 5210826 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032,LOC107731197 coding downstream 187202 5213404 ~ 5258615 (+)
LOC103043955 si:ch211-199o1.2,LOC108442126,LOC107668030 coding downstream 240476 5266678 ~ 5271005 (+)
kcnc4 kcnc4 coding downstream 248454 5274656 ~ 5318448 (+)
alx3 alx3 coding downstream 470467 5496669 ~ 5513671 (+)
G49673 NA non-coding upstream 18450 5002609 ~ 5003622 (+)
LOC107197045 NA non-coding upstream 19978 4997826 ~ 5002094 (+)
G49666 NA non-coding upstream 74307 4889315 ~ 4947765 (+)
G49649 NA non-coding upstream 174650 4822397 ~ 4847422 (+)
G49646 NA non-coding upstream 232052 4789225 ~ 4790020 (+)
G49684 NA non-coding downstream 11467 5037669 ~ 5038409 (+)
G49697 NA non-coding downstream 72546 5098748 ~ 5099463 (+)
G49698 NA non-coding downstream 73912 5100114 ~ 5100348 (+)
G49787 NA non-coding downstream 117054 5143256 ~ 5143529 (+)
G49788 NA non-coding downstream 122219 5148421 ~ 5148655 (+)
G49475 NA other upstream 775845 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 782199 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 1870022 2982846 ~ 3152050 (+)
G48714 NA other upstream 4210807 808155 ~ 811265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 592957 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 750850 5777052 ~ 5789265 (+)
G50063 NA other downstream 1345318 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 1837154 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 1957988 6984190 ~ 6984261 (+)

Expression


Co-expression Network