G49789


Basic Information

Item Value
gene id G49789
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5155142 ~ 5159172 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67277
TCTGTATGTCACCCACatgcacatatatacacatagttatatgtgtatacagctctggaaaaaaatacgagatcacttcagtttctgaatcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacagcatttctcccaaattccaaataaaaatattgtcatttagagcatttatttacagaaaatgagaaatggctgaaataacaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttataagagttcagaaatcaatatttggtggaataaccct
>TU67278
TCTGTATGTCACCCACatgcacatatatacacatagttatatgtgtatacagctctggaaaaaaatacgagatcacttcagtttctgaatcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacagcatttctcccaaattccaaataaaaatattgtcatttagagcatttatttacagaaaatgagaaatggctgaaataacaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttataagagttcagaaatcaatatttggtggaataaccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67277 True 364 lncRNA 0.30 2 5155142 5159172
TU67278 False 364 lncRNA 0.30 2 5155142 5159172

Neighbor

gene id symbol gene type direction distance location
LOC103035057 rimkla,LOC107556480,LOC107717536,LOC107669631,LOC107711947,LOC107591767 coding upstream 161241 4954277 ~ 4993901 (+)
LOC103034196 NA coding upstream 212059 4930544 ~ 4943083 (+)
pdpn NA coding upstream 245940 4889708 ~ 4909202 (+)
bcar3 bcar3 coding upstream 635477 4393701 ~ 4519665 (+)
bend5 bend5,LOC106584333,LOC107707580 coding upstream 1113440 4020453 ~ 4041702 (+)
nfya nfya,nfyal,LOC108265435,LOC107731273,LOC107668092 coding downstream 41858 5201030 ~ 5210826 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032,LOC107731197 coding downstream 54232 5213404 ~ 5258615 (+)
LOC103043955 si:ch211-199o1.2,LOC108442126,LOC107668030 coding downstream 107506 5266678 ~ 5271005 (+)
kcnc4 kcnc4 coding downstream 115484 5274656 ~ 5318448 (+)
alx3 alx3 coding downstream 337497 5496669 ~ 5513671 (+)
G49788 NA non-coding upstream 6487 5148421 ~ 5148655 (+)
G49787 NA non-coding upstream 11613 5143256 ~ 5143529 (+)
G49698 NA non-coding upstream 54794 5100114 ~ 5100348 (+)
G49697 NA non-coding upstream 55679 5098748 ~ 5099463 (+)
G49684 NA non-coding upstream 116733 5037669 ~ 5038409 (+)
G49792 NA non-coding downstream 41318 5200490 ~ 5200717 (+)
G49801 NA non-coding downstream 68249 5227421 ~ 5265359 (+)
G49837 NA non-coding downstream 272257 5431429 ~ 5431637 (+)
G49838 NA non-coding downstream 283237 5442409 ~ 5442685 (+)
G49855 NA non-coding downstream 356389 5515561 ~ 5515859 (+)
G49475 NA other upstream 908915 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 915269 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 2003092 2982846 ~ 3152050 (+)
G48714 NA other upstream 4343877 808155 ~ 811265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 459987 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 617880 5777052 ~ 5789265 (+)
G50063 NA other downstream 1212348 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 1704184 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 1825018 6984190 ~ 6984261 (+)

Expression


Co-expression Network