G49801


Basic Information

Item Value
gene id G49801
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5227421 ~ 5265359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67293
tgcagcttgcaatcagctactggagccctgagagagcagaattggtcttgctctctcttggtgggtacagtagatagcGCTCTCTTTTCCCCCTTATCAcaccaaagggtgatgttgatcagcacaaggcatctgtgagctgatttatgcgctttcctctgagtgttagcgcatcagcagcagttcaaaaagaggcggtagctgatttcacatgtatcggaggaggcatgtgctagtcttcaccctcctggtgtgttggggcattactagtgatagggggggtcttaatgagtgggttgggtaattgaccttgTAAATTGAGGAGTATAAGAGACAGTttctctgttcaaattatgtagtaaactaaagtttgacaaaaatggagatacttgattttttattggacagcaatgatttattttttaactggaCTGGGTCAGACCATCTCCAGAACATCAGGTAGGTCTTGTTGTGGGATGTTCCCAGTATGTAGTGTTCAGTACCatctaaatatttgggttttATATGATGTAAACTtagtttattggctggttgcaaagcAAACGTCTGATAATTGCCTGACTTATAAAAACTCATCCTATTATCTGAGTATCCACATTCATGTGAACACATTGAATAATCAGATTATAGGATTATTTGTGTAAATTTGTTGATAAGATTAATCAGGCTATGAAGTCCTTGTAAACAAATTGATCTGATTACTCACAAACGTCCAATTCTTTGGTAATCAGATTATAGGAATGAAAAAGGTTCATTAAAAAAGTATCTACACAATATCcgacaggtggttttaatgttatggctgattggttgattgtaTTTAAGCATGAGCTGTACGCACAGAAAGTTGACTTCCAGCTCGCTGAGAGATCCAGCGTCTCACTTTTTACAGTCTTTTCAGGTTTATGAAACTTTATGATTAACAGCCATTTCCCAGCACAGCCGTGGAGAGGAGAGGATAGTTTTGATTCCTAAATATAACCAGTCTTAAAATGATCACTGTGAATGCAGACGTTTGAGTAGGCCTACCTGTTTATCTTAATTGTTCTTAATCTTCTTTGTTAACATGACTCTCTTTTGtctaataacatatatactCCCTGCCTTGTTATCTCATTAAATGTCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67293 True 1149 lncRNA 0.39 3 5227421 5265359

Neighbor

gene id symbol gene type direction distance location
nfya nfya,nfyal,LOC108265435,LOC107731273,LOC107668092 coding upstream 16595 5201030 ~ 5210826 (+)
LOC103035057 rimkla,LOC107556480,LOC107717536,LOC107669631,LOC107711947,LOC107591767 coding upstream 233520 4954277 ~ 4993901 (+)
LOC103034196 NA coding upstream 284338 4930544 ~ 4943083 (+)
pdpn NA coding upstream 318219 4889708 ~ 4909202 (+)
bcar3 bcar3 coding upstream 707756 4393701 ~ 4519665 (+)
LOC103043955 si:ch211-199o1.2,LOC108442126,LOC107668030 coding downstream 1319 5266678 ~ 5271005 (+)
kcnc4 kcnc4 coding downstream 9297 5274656 ~ 5318448 (+)
alx3 alx3 coding downstream 231310 5496669 ~ 5513671 (+)
rbm15 rbm15,LOC107731203,LOC107680058 coding downstream 258450 5523809 ~ 5529064 (+)
LOC103025805 pepa,LOC108442134,LOC108414658,LOC108265567 coding downstream 367728 5633087 ~ 5655686 (+)
G49792 NA non-coding upstream 26704 5200490 ~ 5200717 (+)
G49789 NA non-coding upstream 68249 5155142 ~ 5159172 (+)
G49788 NA non-coding upstream 78766 5148421 ~ 5148655 (+)
G49787 NA non-coding upstream 83892 5143256 ~ 5143529 (+)
G49698 NA non-coding upstream 127073 5100114 ~ 5100348 (+)
G49837 NA non-coding downstream 166070 5431429 ~ 5431637 (+)
G49838 NA non-coding downstream 177050 5442409 ~ 5442685 (+)
G49855 NA non-coding downstream 250202 5515561 ~ 5515859 (+)
LOC111192752 NA non-coding downstream 264447 5529806 ~ 5538913 (+)
G49868 NA non-coding downstream 340644 5606003 ~ 5606600 (+)
G49475 NA other upstream 981194 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 987548 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 2075371 2982846 ~ 3152050 (+)
G48714 NA other upstream 4416156 808155 ~ 811265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 353800 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 511693 5777052 ~ 5789265 (+)
G50063 NA other downstream 1106161 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 1597997 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 1718831 6984190 ~ 6984261 (+)

Expression


Co-expression Network