G49868


Basic Information

Item Value
gene id G49868
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5606003 ~ 5606600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67368
ggtctgaccaaaaaaaaagagagaatattCTCACATGGTTTGCTGTGATTCATTTTGATAGGCTCAGATTTTTcccagtgtgaaaacaaaccaaacaatccAAGTTTACAAACTCGTTAATTAATTCACACCAGAGCAAACCTGttgtacactttttaaaatgagtactgtaagattttgtggggaaacactgcacaaattctgcattttatttggaaatcaagggagcagagtctggaggaagagtggagagacacacagtccaatctgcttgaggtctagtgtgaagtttcaaccaatcagtgatggtttggagagacatgccatctgctggtgttgatcctctgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatgctttcccactgctgacaacttttatggagatgcggatttcattttccagcaggagttggcacactgcccacactgccaaaagtcttatataatattctaattttctgagacactgatttttgggtttttccaCTGGCTCTAAGCCATACTCATTAACAATGTGCAAAACTATTCACTGAGTAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67368 True 598 lncRNA 0.39 1 5606003 5606600

Neighbor

gene id symbol gene type direction distance location
rbm15 rbm15,LOC107731203,LOC107680058 coding upstream 76939 5523809 ~ 5529064 (+)
alx3 alx3 coding upstream 92332 5496669 ~ 5513671 (+)
kcnc4 kcnc4 coding upstream 287555 5274656 ~ 5318448 (+)
LOC103043955 si:ch211-199o1.2,LOC108442126,LOC107668030 coding upstream 334998 5266678 ~ 5271005 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032,LOC107731197 coding upstream 347388 5213404 ~ 5258615 (+)
LOC103025805 pepa,LOC108442134,LOC108414658,LOC108265567 coding downstream 26487 5633087 ~ 5655686 (+)
LOC111192754 NA coding downstream 163416 5770016 ~ 5781687 (+)
LOC103022582 adora1b,LOC103022582,LOC108414989,LOC107711940,LOC107680252,LOC107591868,LOC107550463,LOC105912002 coding downstream 285051 5891651 ~ 5912340 (+)
dclre1b NA coding downstream 312574 5919174 ~ 5927170 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding downstream 639629 6246229 ~ 6250603 (+)
LOC111192752 NA non-coding upstream 67090 5529806 ~ 5538913 (+)
G49855 NA non-coding upstream 90144 5515561 ~ 5515859 (+)
G49838 NA non-coding upstream 163318 5442409 ~ 5442685 (+)
G49837 NA non-coding upstream 174366 5431429 ~ 5431637 (+)
G49801 NA non-coding upstream 340644 5227421 ~ 5265359 (+)
G49901 NA non-coding downstream 59339 5665939 ~ 5666658 (+)
G49915 NA non-coding downstream 99099 5705699 ~ 5718260 (+)
G49941 NA non-coding downstream 212363 5818963 ~ 5819283 (+)
G49942 NA non-coding downstream 218015 5824615 ~ 5825171 (+)
G49980 NA non-coding downstream 320805 5927405 ~ 5930023 (+)
G49475 NA other upstream 1359776 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 1366130 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 2453953 2982846 ~ 3152050 (+)
G48714 NA other upstream 4794738 808155 ~ 811265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 12559 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 170452 5777052 ~ 5789265 (+)
G50063 NA other downstream 764920 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 1256756 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 1377590 6984190 ~ 6984261 (+)

Expression


Co-expression Network