prok1 (prok1,LOC107680267,LOC107711938,LOC107731240)


Basic Information

Item Value
gene id prok1
gene name prok1,LOC107680267,LOC107711938,LOC107731240
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5619159 ~ 5627452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67370
CATTTAAGAACTTACCAGAGCTTCAGTGACCCAAGACACCAAAGaggacaagaagaagaagaagaagaagaagaagaagaagaagaagaaaaaacagaagaagaaaaaaaaacaattcttaaaaaagaagacagagaagaagaaaaagaaaaacaacacaaagaagaaaaaagaataaagaataagacTTCGGAAGCTTCGGAAAAGCTTAAGACAGCAACAAACACAGGAAGAACAAGGATCAGCACAAGAACCCTCCATCATCCCTCCTCCTCATCATTTTCTCCTCATCATCTCCTCATTTATAAAAACTAACTAAGATAAAAGAGTAAGAGCATTATAAataagagaaatagagatagagagatagacaggAAGACAGGGTTACAGGAGggtaaagaaaaagaaggacaGATAGAAGTGTGAGAGTGTCCTGTAGTCCTCTGGTGTGGAGCTCTCCTGTTGCTGCTATGAGTTCGCTGGTGCTCTTCTTCTCAGTACTCCTGGTGTCTCTGAGTGGCTGCAGATGCGCCGTCATCACTGGGgcatGTGACAGAGATGTTCAGTGTGGTGTGGGGCTGTGCTGTGCGGTGAGTCTGTGGCTGAGGGGTCTGAGGATGTGCACGCCACAGGGGCTGGAGGGAGACGAGTGCCACCCCTTCAGTCATAAGGTGCCTTTCCCCGGGAAGAGACAGCACCACACCTGCCCCTGCCTGCCTCATCTAGTGTGCACCAGATACGCTGACAGCAGATACCGGTGCACCAACGACTTCAAAAACATTGACTTTTAACTGCatatgagagagacagagagagagagagagagagagagagagagaaatggaggacAGAAGACTACTAAAGAAGGACAAGAATAAGTGCCACCGCTCCAGACTTTTGGTTTTATCGTTCATGCAGTTTGCACTAAACACACTGTTATCACCCGTCTCCTGAACGCAGCACACCGGCCCTCATGTTGTGACGTTTGGCTCAGAAATGCAAAGTCACAGTTGGTTTACTTTGGCCCTCAGTGTATTTAAACTTGATAGGTCACTTAGTCAATCATGTGCTCTGAAACACGCAGCCATACCTGATGACATCCAgaatatattaaacatacagtattataatatttccAAATAAATCTATTGCTCCATA
>XM_007231938.2
caacacaaagaagaaaaaagaataaagaataagacTTCGGAAGCTTCGGAAAAGCTTAAGACAGCAACAAACACAGGAAGAACAAGGATCAGCACAAGAACCCTCCATCATCCCTCCTCCTCATCATTTTCTCCTCATCATCTCCTCATTTATAAAAACTAACTAAGATAAAAGAGTAAGAGCATTATAAataagagaaatagagatagagagatagacaggAAGACAGGGTTACAGGAGggtaaagaaaaagaaggacaGATAGAAGTGTGAGAGTGTCCTGTAGTCCTCTGGTGTGGAGCTCTCCTGTTGCTGCTATGAGTTCGCTGGTGCTCTTCTTCTCAGTACTCCTGGTGTCTCTGAGTGGCTGCAGATGCGCCGTCATCACTGGGgcatGTGACAGAGATGTTCAGTGTGGTGTGGGGCTGTGCTGTGCGGTGAGTCTGTGGCTGAGGGGTCTGAGGATGTGCACGCCACAGGGGCTGGAGGGAGACGAGTGCCACCCCTTCAGTCATAAGGTGCCTTTCCCCGGGAAGAGACAGCACCACACCTGCCCCTGCCTGCCTCATCTAGTGTGCACCAGATACGCTGACAGCAGATACCGGTGCACCAACGACTTCAAAAACATTGACTTTTAACTGCatatgagagagacagagagagagagagagagagagagagagagaaatggaggacAGAAGACTACTAAAGAAGGACAAGAATAAGTGCCACCGCTCCAGACTTTTGGTTTTATCGTTCATGCAGTTTGCACTAAACACACTGTTATCACCCGTCTCCTGAACGCAGCACACCGGCCCTCATGTTGTGACGTTTGGCTCAGAAATGCAAAGTCACAGTTGGTTTACTTTGGCCCTCAGTGTATTTAAACTTGATAGGTCACTTAGTCAATCATGTGCTCTGAAACACGCAGCCATACCTGATGACATCCAgaatatattaaacatacagtattataatatttccAAATAAATCTATTGCTCCATA

Function

symbol description
prok1 Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in circadian rhythm; positive regulation of cell population proliferation; and regulation of angiogenesis. Predicted to be active in extracellular region. Orthologous to human PROK1 (prokineticin 1).

NR:

description
PREDICTED: prokineticin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67370 True 1158 TUCP 0.44 3 5619159 5627452
XM_007231938.2 False 1005 mRNA 0.46 3 5619312 5627452

Neighbor

gene id symbol gene type direction distance location
rbm15 rbm15,LOC107731203,LOC107680058 coding upstream 90095 5523809 ~ 5529064 (+)
alx3 alx3 coding upstream 105488 5496669 ~ 5513671 (+)
kcnc4 kcnc4 coding upstream 300711 5274656 ~ 5318448 (+)
LOC103043955 si:ch211-199o1.2,LOC108442126,LOC107668030 coding upstream 348154 5266678 ~ 5271005 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032,LOC107731197 coding upstream 360544 5213404 ~ 5258615 (+)
LOC103025805 pepa,LOC108442134,LOC108414658,LOC108265567 coding downstream 5635 5633087 ~ 5655686 (+)
LOC111192754 NA coding downstream 142564 5770016 ~ 5781687 (+)
LOC103022582 adora1b,LOC103022582,LOC108414989,LOC107711940,LOC107680252,LOC107591868,LOC107550463,LOC105912002 coding downstream 264199 5891651 ~ 5912340 (+)
dclre1b NA coding downstream 291722 5919174 ~ 5927170 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding downstream 618777 6246229 ~ 6250603 (+)
G49868 NA non-coding upstream 12559 5606003 ~ 5606600 (+)
LOC111192752 NA non-coding upstream 80246 5529806 ~ 5538913 (+)
G49855 NA non-coding upstream 103300 5515561 ~ 5515859 (+)
G49838 NA non-coding upstream 176474 5442409 ~ 5442685 (+)
G49837 NA non-coding upstream 187522 5431429 ~ 5431637 (+)
G49901 NA non-coding downstream 38487 5665939 ~ 5666658 (+)
G49915 NA non-coding downstream 78247 5705699 ~ 5718260 (+)
G49941 NA non-coding downstream 191511 5818963 ~ 5819283 (+)
G49942 NA non-coding downstream 197163 5824615 ~ 5825171 (+)
G49980 NA non-coding downstream 299953 5927405 ~ 5930023 (+)
G49475 NA other upstream 1372932 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 1379286 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 2467109 2982846 ~ 3152050 (+)
G48714 NA other upstream 4807894 808155 ~ 811265 (+)
LOC103023397 NA other downstream 149600 5777052 ~ 5789265 (+)
G50063 NA other downstream 744068 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 1235904 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 1356738 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 2103232 7730684 ~ 7884058 (+)

Expression


Co-expression Network