G49901


Basic Information

Item Value
gene id G49901
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5665939 ~ 5666658 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67409
ATGAGCATTCACTCTCAGCTTTGCCTCTCAAAGCAGAGACCTCCTGCAAAATTCTCTATctacacataaaaaacatagacatcaatcaaaaaacaaaatgctaCTTCACCACTGCTTCAGAGAGacttattacaaaataaaagtccataCATTTGCTCTGGTGTGGCTCCCAAACAGAGAAACAGTACCCAGTACCATCTGCAGTCACTCTTCCTCAACATTTCCTACAGTATAACAAACCAAtgcttatatttaattaaatactgATTCTTTAATTCACTCTCGCTATATTTTACAAAGCAGAACAGTGGAGGCACAGCAAGATAatcatattaaataattacaaggtgtgatttcatatcatattttaCGACTGTACCGCCTCACTGAATCTTACATACTGTACAGaatatacacaaataatatCTCTGCTGCACACGGCCTGCCTCACGCGGTAACAGCAGATTGAGTCATCTTCATCCGTTCAGTTCTCTATGAAGAACAGGGAAGTGAGCTGCTGATCTTCGCGTCCTGTATCGCAATCCGAGTGTGTTTACACCAGCGTGTGTAAGGTCTCTATTCCCCTGTGAAGGTTATGACGTCGTACTGGATGCCCTGCTGCTGcatctgctccagctgttcggGTGTGGCCTCTGTGGTGTAGACCGTCTGAGCTTGGGCCATGGCTGCGTCGGCT

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU67409 True 697 lncRNA 0.43 2 5665939 5666658

Neighbor

gene id symbol gene type direction distance location
LOC103025805 pepa,LOC108442134,LOC108414658,LOC108265567 coding upstream 10253 5633087 ~ 5655686 (+)
rbm15 rbm15,LOC107731203,LOC107680058 coding upstream 136875 5523809 ~ 5529064 (+)
alx3 alx3 coding upstream 152268 5496669 ~ 5513671 (+)
kcnc4 kcnc4 coding upstream 347491 5274656 ~ 5318448 (+)
LOC103043955 si:ch211-199o1.2,LOC108442126,LOC107668030 coding upstream 394934 5266678 ~ 5271005 (+)
LOC111192754 NA coding downstream 103358 5770016 ~ 5781687 (+)
LOC103022582 adora1b,LOC103022582,LOC108414989,LOC107711940,LOC107680252,LOC107591868,LOC107550463,LOC105912002 coding downstream 224993 5891651 ~ 5912340 (+)
dclre1b NA coding downstream 252516 5919174 ~ 5927170 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding downstream 579571 6246229 ~ 6250603 (+)
LOC103046376 LOC103046376 coding downstream 683484 6350142 ~ 6354308 (+)
G49868 NA non-coding upstream 59339 5606003 ~ 5606600 (+)
LOC111192752 NA non-coding upstream 127026 5529806 ~ 5538913 (+)
G49855 NA non-coding upstream 150080 5515561 ~ 5515859 (+)
G49838 NA non-coding upstream 223254 5442409 ~ 5442685 (+)
G49837 NA non-coding upstream 234302 5431429 ~ 5431637 (+)
G49915 NA non-coding downstream 39041 5705699 ~ 5718260 (+)
G49941 NA non-coding downstream 152305 5818963 ~ 5819283 (+)
G49942 NA non-coding downstream 157957 5824615 ~ 5825171 (+)
G49980 NA non-coding downstream 260747 5927405 ~ 5930023 (+)
G49982 NA non-coding downstream 261818 5928476 ~ 5929255 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 38487 5619159 ~ 5627452 (+)
G49475 NA other upstream 1419712 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 1426066 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 2513889 2982846 ~ 3152050 (+)
G48714 NA other upstream 4854674 808155 ~ 811265 (+)
LOC103023397 NA other downstream 110394 5777052 ~ 5789265 (+)
G50063 NA other downstream 704862 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 1196698 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 1317532 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 2064026 7730684 ~ 7884058 (+)

Expression


Co-expression Network