G49980


Basic Information

Item Value
gene id G49980
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5927405 ~ 5930023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67513
ccctagtttttaatcacagtttactaatgattcttggcatgttctactccatcactccaccagtcttacacactgcttttgaataactttatgcctttactcctggtgcaaaaatgtaagcagttcagcttggtttgatggtgtgtgaacatccatcttcctctttattatattccagagattttcagtttggtaaaatcaaagaaactcatcacttttaagtggtctcttatttttttttccagaactgtatttgTGTCTTGCTATTCAAACAAAAAATGCAATTGGCTGCAAAACTACACTTATTAATTactaatatttaatacttaacattttaatatctcagCAGGCATACCAAAAAAATGCACAGTACGTTTACCTCAACAGCTCTATTtgaatcatgattttttttagaagtgcaattctagtcacacatttatttatctatccaGCTAGCAAGCTATAGCTACCTTATCAAtgctattttaaaaaacaatttacatCAGTAGTTCAATTGTAGGAGGAGAAGGTGGAGTGTGGGCCTGCCACTGCTGCTTAAAATGATTCTAAAGTTGAAGGAAACgtagtatgacaaaaaatatattaggcATTGTCTGGTGtatcttttcacttattttccACTTTCAGATGCGTATTTCCGTAACGGAATGTTCAGTGCATGCCTAGTGTTACCAGATAGATACCCTTTATGACGTGAACAGTTAATAATGAATGGATCATTCCAAGATTtcttggaataaaatattgtggaaaCTTTTGTGTGAAGTTGAAATATTTTCTTActtttgtaaattattattattattttttataatttttttgtttgtttgtttgttttgttcttttgttttttttgtgactgcacCAGTTTGCATTGTTCATCTGTTCACTTATGACTGCAAGGTGCTCatTACTGCTTAAGTgtgattccttttttgtttctatAATGTGTTAAAGGAAGgtttgtgtgggttttttttttttttttttttttttgaggtttgtgaatatataatttattttaataaccttTTCAAGCACCTTAATTTTCTCAACCTGCCCCAACTATTATTTGTGTTGTGGCTTACATGTTTTCCCTAACACAGTGCCAACAATGTGAAAAGCTCAGTAGAAATGATCTACATGTTCACATTTAATTGTATATACTTTCATACTAGTTCAACTTTCACAGAAACTCCAGAGTGAAGTGtcttacattatttacagcGTTCAGTGTTGTGTTCTGTGGTGACATTGTTGTAAATCATTATGTTTTACCTCTTCATGTAGCCAAAGTTTTTGGATGTACTTATAATCCATCATTACATCTGTGTCTAATACTGTTTTTATACCCAACCATAACTGTATTTGTTGCTATAGTGCCAGGATGGGTTTTAATAAATGCCTTGGAAAGTAGAAAAGCCACTGTTTTGTACTGAAAATGTGAAGAATAAAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67513 True 1479 lncRNA 0.32 2 5927405 5930023

Neighbor

gene id symbol gene type direction distance location
dclre1b NA coding upstream 235 5919174 ~ 5927170 (+)
LOC103022582 adora1b,LOC103022582,LOC108414989,LOC107711940,LOC107680252,LOC107591868,LOC107550463,LOC105912002 coding upstream 15065 5891651 ~ 5912340 (+)
LOC111192754 NA coding upstream 145718 5770016 ~ 5781687 (+)
LOC103025805 pepa,LOC108442134,LOC108414658,LOC108265567 coding upstream 271719 5633087 ~ 5655686 (+)
rbm15 rbm15,LOC107731203,LOC107680058 coding upstream 398341 5523809 ~ 5529064 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding downstream 316206 6246229 ~ 6250603 (+)
LOC103046376 LOC103046376 coding downstream 420119 6350142 ~ 6354308 (+)
LOC103046076 LOC103046076,LOC108442386 coding downstream 428472 6358495 ~ 6371015 (+)
LOC103037089 LOC108442388,LOC105023850 coding downstream 462801 6392824 ~ 6400833 (+)
LOC103043236 NA coding downstream 531520 6461543 ~ 6472088 (+)
G49942 NA non-coding upstream 102234 5824615 ~ 5825171 (+)
G49941 NA non-coding upstream 108122 5818963 ~ 5819283 (+)
G49915 NA non-coding upstream 209145 5705699 ~ 5718260 (+)
G49901 NA non-coding upstream 260747 5665939 ~ 5666658 (+)
G49868 NA non-coding upstream 320805 5606003 ~ 5606600 (+)
G50009 NA non-coding downstream 217427 6147450 ~ 6148423 (+)
G50012 NA non-coding downstream 222554 6152577 ~ 6155022 (+)
G50025 NA non-coding downstream 249769 6179792 ~ 6251881 (+)
G50036 srpk1,LOC107591832,LOC107745731 non-coding downstream 335906 6265929 ~ 6280930 (+)
G50051 mapk14a,LOC106572737,LOC108442382,LOC108265726,LOC105023895,LOC103368176 non-coding downstream 357813 6287836 ~ 6296349 (+)
LOC103023397 NA other upstream 138140 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 299953 5619159 ~ 5627452 (+)
G49475 NA other upstream 1681178 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 1687532 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 2775355 2982846 ~ 3152050 (+)
G50063 NA other downstream 441497 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 933333 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 1054167 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1800661 7730684 ~ 7884058 (+)
G50568 NA other downstream 2277319 8207342 ~ 8221162 (+)

Expression


Co-expression Network