G50036 (srpk1,LOC107591832,LOC107745731)


Basic Information

Item Value
gene id G50036
gene name srpk1,LOC107591832,LOC107745731
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6265929 ~ 6280930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67597
GAATGCTTTATCAAGATTAAGGAAGTGAGAAAGAAGTATTTACACCCAGTGTTAAAGGCATTATGGATGTGAAAGTGAGACACTGAACAAAAAGTAAACaagggagtgaaagagagtcGACCTGCAGATCCAGAAGGAGGCGGTGCTCCTGCTCTCTGCCATTCTGTAGCTTCGGCTGCCAGCCTCCTCACATATGACTCATCCACACTCATTAGTATGTTCTCTGGCTTTATGTCTGTGTGGATGATCTTACACTTTGTGTGCAGGTAGTCAAGGCCCTGCAGAACCTGTCGAATGATGCTCTTGACGCAAGGCAGGGGTAAGCCTTGATAGTTAGACTTGATAATCCACTTAAGTAAATGGTGCCCCAGCACTTCAAACACCATGCACACATGAGTTCCGTTCACCCCTGAGATTTTAAAGTCGTCTAACAGCTGAACCACCATCTCTCTGTTTGGATCATCAGGGTCTGTGTTTCTGACAGATCTTAATAGTTTTATCTCATCCAGGGCTGTTTCAGTATAATGCTCTGCACTCTTTACCACCTTCATTGCCACAAACCGCTTCCCTTGGATGTCCAGGGCGAGCCACACTGTTGAGAAATGTCCCCAGCCCAGCTTTCGGATCACATGGTACTTCCCATTGTAAAGGTCTCCAATCTTCACATGATGGTAGCCACTTTGCAGTAATCATTGGGGTCTTCCTGCTCCTCATCATCTGAGCCCAGGATTTCTTCATCGGGCTCCTGCTGCTGAGGCTCAGCGGGcggttgctgctgctgctgctgttgaggCGCTCGTCTCGAGTGTTGAGTAGGCTTCTTGAGAGACTTCTTGGCTTTCCCCCTTTTCTTTCTCGCCTGGAGTGCGAGAACTTTTCTCTCCATGTTGGCCCGGTAGTTGGTGGCTGGAGCACCCACGCGCATGCGCGGATCCGGAGCTGTGCTCtgcctgtgcgtgtgtg

Function

symbol description
srpk1 Enables ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Involved in several processes, including protein phosphorylation; regulation of mRNA processing; and regulation of viral genome replication. Located in several cellular components, including chromatin; cytosol; and nuclear speck.

NR:

description
PREDICTED: SRSF protein kinase 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67597 True 963 lncRNA 0.50 8 6265929 6280930

Neighbor

gene id symbol gene type direction distance location
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding upstream 15326 6246229 ~ 6250603 (+)
dclre1b NA coding upstream 338759 5919174 ~ 5927170 (+)
LOC103022582 adora1b,LOC103022582,LOC108414989,LOC107711940,LOC107680252,LOC107591868,LOC107550463,LOC105912002 coding upstream 353589 5891651 ~ 5912340 (+)
LOC111192754 NA coding upstream 484242 5770016 ~ 5781687 (+)
LOC103025805 pepa,LOC108442134,LOC108414658,LOC108265567 coding upstream 610243 5633087 ~ 5655686 (+)
LOC103046376 LOC103046376 coding downstream 69212 6350142 ~ 6354308 (+)
LOC103046076 LOC103046076,LOC108442386 coding downstream 77565 6358495 ~ 6371015 (+)
LOC103037089 LOC108442388,LOC105023850 coding downstream 111894 6392824 ~ 6400833 (+)
LOC103043236 NA coding downstream 180613 6461543 ~ 6472088 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding downstream 265639 6546569 ~ 6587345 (+)
G50025 NA non-coding upstream 14048 6179792 ~ 6251881 (+)
G50012 NA non-coding upstream 110907 6152577 ~ 6155022 (+)
G50009 NA non-coding upstream 117506 6147450 ~ 6148423 (+)
G49980 NA non-coding upstream 335906 5927405 ~ 5930023 (+)
G49982 NA non-coding upstream 336674 5928476 ~ 5929255 (+)
G50051 mapk14a,LOC106572737,LOC108442382,LOC108265726,LOC105023895,LOC103368176 non-coding downstream 6906 6287836 ~ 6296349 (+)
G50050 NA non-coding downstream 11491 6292421 ~ 6295248 (+)
G50071 rpl10a,LOC103141192 non-coding downstream 137854 6418784 ~ 6423352 (+)
G50092 tbc1d25 non-coding downstream 195645 6476575 ~ 6479992 (+)
G50135 NA non-coding downstream 217064 6497994 ~ 6499008 (+)
LOC103023397 NA other upstream 476664 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 638477 5619159 ~ 5627452 (+)
G49475 NA other upstream 2019702 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2026056 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 3113879 2982846 ~ 3152050 (+)
G50063 NA other downstream 90590 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 582426 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 703260 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1449754 7730684 ~ 7884058 (+)
G50568 NA other downstream 1926412 8207342 ~ 8221162 (+)

Expression


Co-expression Network