G50071 (rpl10a,LOC103141192)


Basic Information

Item Value
gene id G50071
gene name rpl10a,LOC103141192
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6418784 ~ 6423352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU67643
AAACAGTGTTCATATTTTAGGGCCTTACTCTCCATCCCTACTATTTAGTGATGATTTCTAAGCTGTTTTAATATGAATGTTTACTTCAAAATCCTAAGAGAAgcaaggaggaaaaaaaaatctacgaCAAGCAAGATTTGGATTAATCCACATTTATTATAGAAAAGCAAAGTACAGAGTCTCTAATAGAGACGCTGAGGCTTTCCCATGGTGCTCTTGATGTACAGAGCTCTAACGTTCTGCCAGTTCTTCTTCAACAGAGACACCAAGAAGTTCACAGCGAGATGGATGTTGTACACCAGCTCATCCTCAGACATCCTCACATGGCCCACAGCCACAGCCAGACACAGCACCTGAGGACATCAAACACCAAAagatattaatacattaatttcaGCAATCACACATCTTGGCAGTCATAACAAAATTCTCAAACTTTACAAGAGAAGCAGAACATTACggttttaatggaagtcaataaaAAGTTCATCCTGAAACTGTTCCATGAGGCACATATTAAATTGAAGCACTGACATTTATTGAGTCTACATTTAAAACTGACCAAAGCTCAAATCACTATTACAGAAAAAGCAAATCTTTACACCACATTACACAAATAACCTCATACCTTCTTCATCTGGAATTTGATGGTAGACTTGACCTCATCCACCTTGGTGTTCAGGTTCTCGTTGTGGGTGAGCAGAGAGGGGAACTTTCCAGCCTTGTTGAGACCAGGACCCAGGATACGAGGAATCTGCTTAATCAGGGACTCAGAAGCCAGGAAGGCATCgtatttttttACCCAGTTTCTTGACCagcttcttgttcttgttcagCTTTTTGAGAGCCTCAATGTCCATGTGGGGGATTTCAGCTGCCTTGGCTTCATCACAATGCTGCTGGTCACCAAGAACACACACTGAGAACTTGGGACGAGGGGTGGTCTTCAGCCTGCAAAGAgcaaagcaagaaaaaaaaaaaaacaaaaaaacccaaacattaataataactaaAGACGACTGGTGCTCTCATACCAGGTGATGCAGAACGGAGGAGTCTTACCCATACCGCGTTGGCTGGCATCAGGAGCCGACAGCACAGTCATACAGTAAAATGGTCGGCTAAGGGACGAGAGCACGTATGCCCCCACCCTTAGCCTCCCCTCATGTTTTAAGACCCAGGGTAGGGGTCCGTCTGCTGTACCAACCTAGACTAGGAGGCAGCAGACTACCCAGAGCTGTTCTCCACTGCCTGTCTCTAGTCAGCCTAAATAGCTCAAGTTCAAGCTCAGACTGGtttcttatttaaataaagttattattagGCAGGGTAGGATACAGGCAGAGAGAAGGTTGGGTGAAACAGTAAAGGTCCGAACCTGACAGTGCCTGAGAAACGCTTGTCCTTCTGGGGATCATAGTTCTTCAAGCTGATCTGCAGCTCAACCGTCTCCAAGAACTTTTCCTTTTAGCAATGGAGCCAGACTGGACCTCCCGAACCGCCTCGTACAACGTGTCTCTTGAGACCTTgctgtatttataaaaaCTCATTTTGGCTTGCCGTCTCCTTCCACACGGAGCTTGAAAAAGGAAGGAGGAAAGGAAGTTACGCTAAATATAAGCGCCTG
>TU67646
AAACAGTGTTCATATTTTAGGGCCTTACTCTCCATCCCTACTATTTAGTGATGATTTCTAAGCTGTTTTAATATGAATGTTTACTTCAAAATCCTAAGAGAAgcaaggaggaaaaaaaaatctacgaCAAGCAAGATTTGGATTAATCCACATTTATTATAGAAAAGCAAAGTACAGAGTCTCTAATAGAGACGCTGAGGCTTTCCCATGGTGCTCTTGATGTACAGAGCTCTAACGTTCTGCCAGTTCTTCTTCAACAGAGACACCAAGAAGTTCACAGCGAGATGGATGTTGTACACCAGCTCATCCTCAGACATCCTCACATGGCCCACAGCCACAGCCAGACACAGACCTTCTTCATCTGGAATTTGATGGTAGACTTGACCTCATCCACCTTGGTGTTCAGGTTCTCGTTGTGGGTGAGCAGAGAGGGGAACTTTCCAGCCTTGTTGAGACCAGGACCCAGGATACGAGGAATCTGCTTAATCAGGGACTCAGAAGCCAGGAAGGCATCgtatttttACCCAGTTTCTTGACCagcttcttgttcttgttcagCTTTTTGAGAGCCTCAATGTCCATGTGGGGGATTTCAGCTGCCTTGGCTTCATCACAATGCTGCTGGTCACCAAGAACACACACTGAGAACTTGGGACGAGGGGTGGTCTTCAGCCTGCAAAGAgcaaagcaagaaaaaaaaaaaaacaaaaaaacccaaacattaataataactaaAGACGACTGGTGCTCTCATACCAGGTGATGCAGAACGGAGGAGTCTTACCCATACCGCGTTGGCTGGCATCAGGAGCCGACAGCACAGTCATACAGTAAAATGGTCGGCTAAGGGACGAGAGCACGTATGCCCCCACCCTTAGCCTCCCCTCATGTTTTAAGACCCAGGGTAGGGGTCCGTCTGCTGTACCAACCTAGACTAGGAGGCAGCAGACTACCCAGAGCTGTTCTCCACTGCCTGTCTCTAGTCAGCCTAAATAGCTCAAGTTCAAGCTCAGACTGGtttcttatttaaataaagttattattagGCAGGGTAGGATACAGGCAGAGAGAAGGTTGGGTGAAACAGTAAAGGTCCGAACCTGACAGTGCCTGAGAAACGCTTGTCCTTCTGGGGATCATAGTTCTTCAAGCTGATCTGCAGCTCAACCGTCTCCAAGAACTTTTCCTTTTAGCAATGGAGCCAGACTGGACCTCCCGAACCGCCTCGTACAACGTGTCTCTTGAGACCTTgctgtatttataaaaaCTCATTTTGGCTTGCCGTCTCCTTCCACACGGAGCTTGAAAAAGGAAGGAGGAAAGGAAGTTACGCTAAATATAAGCGCCTG

Function

symbol description
rpl10a Predicted to enable RNA binding activity. Acts upstream of or within hemoglobin biosynthetic process. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL10A (ribosomal protein L10a).

NR:

description
60S ribosomal protein L10a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67643 True 1627 lncRNA 0.44 4 6418784 6423352
TU67646 False 1349 lncRNA 0.46 5 6418784 6423352

Neighbor

gene id symbol gene type direction distance location
LOC103037089 LOC108442388,LOC105023850 coding upstream 17951 6392824 ~ 6400833 (+)
LOC103046076 LOC103046076,LOC108442386 coding upstream 47769 6358495 ~ 6371015 (+)
LOC103046376 LOC103046376 coding upstream 64476 6350142 ~ 6354308 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding upstream 168181 6246229 ~ 6250603 (+)
dclre1b NA coding upstream 491614 5919174 ~ 5927170 (+)
LOC103043236 NA coding downstream 38191 6461543 ~ 6472088 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding downstream 123217 6546569 ~ 6587345 (+)
was was coding downstream 166939 6590291 ~ 6601742 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding downstream 325047 6748399 ~ 6771061 (+)
c6h6orf226 NA coding downstream 375302 6798654 ~ 6800365 (+)
G50051 mapk14a,LOC106572737,LOC108442382,LOC108265726,LOC105023895,LOC103368176 non-coding upstream 122435 6287836 ~ 6296349 (+)
G50050 NA non-coding upstream 123536 6292421 ~ 6295248 (+)
G50036 srpk1,LOC107591832,LOC107745731 non-coding upstream 137854 6265929 ~ 6280930 (+)
G50025 NA non-coding upstream 166903 6179792 ~ 6251881 (+)
G50012 NA non-coding upstream 263762 6152577 ~ 6155022 (+)
G50092 tbc1d25 non-coding downstream 53223 6476575 ~ 6479992 (+)
G50135 NA non-coding downstream 74642 6497994 ~ 6499008 (+)
G50136 NA non-coding downstream 75717 6499069 ~ 6499432 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding downstream 76797 6500149 ~ 6504331 (+)
G50172 NA non-coding downstream 273751 6697103 ~ 6730556 (+)
G50063 NA other upstream 42079 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 629519 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 791332 5619159 ~ 5627452 (+)
G49475 NA other upstream 2172557 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2178911 4199939 ~ 4239873 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 440004 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 560838 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1307332 7730684 ~ 7884058 (+)
G50568 NA other downstream 1783990 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1846896 8270248 ~ 8278756 (+)

Expression


Co-expression Network